Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15835

Experiment: Bas39

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas39
1,937,599	+	feoB	HEPCGN_15825	0.86	+0.1
1,937,599	+	feoB	HEPCGN_15825	0.86	-0.8
1,937,599	+	feoB	HEPCGN_15825	0.86	-0.0
1,937,599	+	feoB	HEPCGN_15825	0.86	+0.4
1,937,609	+	feoB	HEPCGN_15825	0.87	+0.2
1,937,678	+	feoB	HEPCGN_15825	0.90	-0.2
1,937,679	-	feoB	HEPCGN_15825	0.90	-0.3
1,937,679	-	feoB	HEPCGN_15825	0.90	+1.5
1,937,679	-	feoB	HEPCGN_15825	0.90	-1.0
1,937,736	-				+0.0
1,937,736	-				+0.7
1,937,736	-				-0.2
1,937,736	-				+0.2
1,937,824	-				-1.1
1,937,827	+				+0.0
1,937,856	+				+0.8
1,937,861	-				-0.5
1,937,861	-				+0.6
1,937,861	-				+0.1
1,937,861	-				+0.3
1,937,887	-				+1.4
1,937,894	-				+0.3
1,937,894	-				+0.4
1,937,961	-	feoA	HEPCGN_15830	0.12	+0.8
1,937,981	+	feoA	HEPCGN_15830	0.21	-0.6
1,937,981	+	feoA	HEPCGN_15830	0.21	+0.4
1,937,985	-	feoA	HEPCGN_15830	0.23	+0.2
1,938,050	-	feoA	HEPCGN_15830	0.51	+0.0
1,938,065	+	feoA	HEPCGN_15830	0.58	-0.3
1,938,065	+	feoA	HEPCGN_15830	0.58	-0.6
1,938,066	-	feoA	HEPCGN_15830	0.58	+0.6
1,938,075	-	feoA	HEPCGN_15830	0.62	-0.7
1,938,075	-	feoA	HEPCGN_15830	0.62	-0.7
1,938,154	-				+0.2
1,938,161	-				-0.3
1,938,168	+				-0.1
1,938,169	-				+0.6
1,938,194	+				+0.1
1,938,194	+				-0.9
1,938,194	+				-0.2
1,938,194	+				-0.5
1,938,335	+				-0.2
1,938,336	-				+0.1
1,938,367	+				-0.1
1,938,369	+				-0.1
1,938,403	-				-0.2
1,938,403	-				-0.1
1,938,405	+				-0.3
1,938,457	-				-0.6
1,938,469	+				-0.3
1,938,470	-				-0.3
1,938,470	-				-0.6
1,938,522	+				-1.0
1,938,523	-				+0.1
1,938,580	-				+1.7
1,938,599	+				-0.0
1,938,645	+				+1.8
1,938,645	+				-0.1
1,938,844	-	yhgF	HEPCGN_15835	0.11	+0.2
1,939,203	-	yhgF	HEPCGN_15835	0.26	+0.5
1,939,448	-	yhgF	HEPCGN_15835	0.37	+0.5
1,939,459	+	yhgF	HEPCGN_15835	0.37	+0.1
1,939,459	+	yhgF	HEPCGN_15835	0.37	+0.5
1,939,460	-	yhgF	HEPCGN_15835	0.37	+0.2
1,939,511	+	yhgF	HEPCGN_15835	0.39	-0.1
1,939,519	+	yhgF	HEPCGN_15835	0.40	+1.0
1,939,520	-	yhgF	HEPCGN_15835	0.40	-0.2
1,939,520	-	yhgF	HEPCGN_15835	0.40	-0.0
1,939,528	-	yhgF	HEPCGN_15835	0.40	-0.3
1,939,727	+	yhgF	HEPCGN_15835	0.49	-0.3
1,939,785	+	yhgF	HEPCGN_15835	0.51	+0.4
1,939,848	-	yhgF	HEPCGN_15835	0.54	+0.2
1,940,162	+	yhgF	HEPCGN_15835	0.67	-1.0
1,940,163	-	yhgF	HEPCGN_15835	0.67	+0.2
1,940,218	+	yhgF	HEPCGN_15835	0.70	+0.3
1,940,275	+	yhgF	HEPCGN_15835	0.72	+0.7
1,940,372	+	yhgF	HEPCGN_15835	0.76	-0.1
1,940,372	+	yhgF	HEPCGN_15835	0.76	-0.9
1,940,373	-	yhgF	HEPCGN_15835	0.76	-0.8
1,940,373	-	yhgF	HEPCGN_15835	0.76	+0.0
1,940,373	-	yhgF	HEPCGN_15835	0.76	-0.1
1,940,429	+	yhgF	HEPCGN_15835	0.79	+0.4
1,940,429	+	yhgF	HEPCGN_15835	0.79	+0.1
1,940,430	-	yhgF	HEPCGN_15835	0.79	-0.1
1,940,486	+	yhgF	HEPCGN_15835	0.81	+0.1
1,940,486	+	yhgF	HEPCGN_15835	0.81	-0.9
1,940,610	-	yhgF	HEPCGN_15835	0.87	+0.5
1,940,735	+				+0.5
1,940,735	+				+0.3
1,940,735	+				-0.4
1,940,757	+				-0.4
1,940,823	+				-0.3
1,940,824	-				+0.3
1,940,957	+				+0.8
1,940,957	+				-0.8
1,940,958	-				-0.4
1,940,958	-				+0.1
1,940,958	-				+0.0
1,940,958	-				-0.2
1,940,961	+				-0.3
1,940,963	+				+1.4
1,940,964	-				+0.2
1,941,005	-				-0.1
1,941,018	-				-0.6
1,941,042	+				+0.4
1,941,047	+				-1.0
1,941,144	-	greB	HEPCGN_15840	0.27	+0.3
1,941,171	-	greB	HEPCGN_15840	0.32	+0.1
1,941,263	+	greB	HEPCGN_15840	0.52	+0.6
1,941,302	+	greB	HEPCGN_15840	0.60	+0.1
1,941,340	-	greB	HEPCGN_15840	0.68	+0.1
1,941,342	+	greB	HEPCGN_15840	0.68	+0.7
1,941,344	+	greB	HEPCGN_15840	0.69	+0.1
1,941,344	+	greB	HEPCGN_15840	0.69	-0.2
1,941,345	-	greB	HEPCGN_15840	0.69	+0.4
1,941,351	-	greB	HEPCGN_15840	0.70	+0.3
1,941,434	+	greB	HEPCGN_15840	0.88	-0.2
1,941,440	-	greB	HEPCGN_15840	0.89	+0.6
1,941,535	+				+0.7
1,941,538	-				-0.2
1,941,549	-				+0.4
1,941,578	+				+0.1
1,941,591	+				-0.9
1,941,592	-				-0.0
1,941,592	-				-0.2
1,941,592	-				+1.5
1,941,604	-				+0.2
1,941,604	-				-0.1
1,941,663	-				+0.1
1,941,713	-				+0.2
1,941,732	+				-0.1
1,941,758	+				+1.0
1,941,759	-				+0.4
1,941,786	+				-0.3
1,941,872	+	ompR_G63V	HEPCGN_15845	0.21	-0.0
1,941,872	+	ompR_G63V	HEPCGN_15845	0.21	-0.9
1,941,873	-	ompR_G63V	HEPCGN_15845	0.21	-0.4
1,941,873	-	ompR_G63V	HEPCGN_15845	0.21	+0.9
1,941,877	+	ompR_G63V	HEPCGN_15845	0.22	-0.9
1,941,892	+	ompR_G63V	HEPCGN_15845	0.24	-0.3
1,941,892	+	ompR_G63V	HEPCGN_15845	0.24	+1.0
1,941,893	-	ompR_G63V	HEPCGN_15845	0.24	+0.1