Strain Fitness in Escherichia coli ECOR38 around HEPCGN_14980

Experiment: Bas39

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas39
1,754,096	+				+0.0
1,754,103	+				-0.5
1,754,104	-				-0.1
1,754,187	+				+0.1
1,754,192	+				+0.6
1,754,227	-	dppC	HEPCGN_14975	0.12	+0.8
1,754,277	+	dppC	HEPCGN_14975	0.18	-0.1
1,754,277	+	dppC	HEPCGN_14975	0.18	-0.1
1,754,277	+	dppC	HEPCGN_14975	0.18	-0.8
1,754,277	+	dppC	HEPCGN_14975	0.18	+0.1
1,754,279	+	dppC	HEPCGN_14975	0.18	-0.3
1,754,401	-	dppC	HEPCGN_14975	0.32	-0.9
1,754,640	+	dppC	HEPCGN_14975	0.58	-0.0
1,754,641	-	dppC	HEPCGN_14975	0.58	-0.2
1,754,651	-	dppC	HEPCGN_14975	0.59	-0.5
1,754,651	-	dppC	HEPCGN_14975	0.59	+0.2
1,754,741	+	dppC	HEPCGN_14975	0.69	-0.7
1,754,742	-	dppC	HEPCGN_14975	0.69	+0.4
1,754,874	-	dppC	HEPCGN_14975	0.84	-0.3
1,754,874	-	dppC	HEPCGN_14975	0.84	-0.6
1,754,963	+				+1.5
1,755,036	-				-0.5
1,755,045	-				+0.1
1,755,054	-				+0.1
1,755,187	-	dppD	HEPCGN_14980	0.16	+0.9
1,755,258	+	dppD	HEPCGN_14980	0.23	-0.9
1,755,259	-	dppD	HEPCGN_14980	0.23	+0.3
1,755,344	-	dppD	HEPCGN_14980	0.32	-0.1
1,755,363	+	dppD	HEPCGN_14980	0.34	+0.3
1,755,363	+	dppD	HEPCGN_14980	0.34	-0.2
1,755,376	-	dppD	HEPCGN_14980	0.35	-0.2
1,755,611	+	dppD	HEPCGN_14980	0.59	-0.5
1,755,612	-	dppD	HEPCGN_14980	0.59	-0.1
1,755,612	-	dppD	HEPCGN_14980	0.59	+0.2
1,755,612	-	dppD	HEPCGN_14980	0.59	-0.2
1,755,624	-	dppD	HEPCGN_14980	0.61	+1.5
1,755,653	+	dppD	HEPCGN_14980	0.64	-1.0
1,755,654	-	dppD	HEPCGN_14980	0.64	-0.5
1,755,654	-	dppD	HEPCGN_14980	0.64	+0.3
1,755,657	+	dppD	HEPCGN_14980	0.64	+0.4
1,755,693	+	dppD	HEPCGN_14980	0.68	-0.0
1,755,693	+	dppD	HEPCGN_14980	0.68	-1.0
1,755,694	-	dppD	HEPCGN_14980	0.68	+0.0
1,755,709	+	dppD	HEPCGN_14980	0.69	-0.1
1,755,709	+	dppD	HEPCGN_14980	0.69	+0.3
1,755,709	+	dppD	HEPCGN_14980	0.69	-0.2
1,755,709	+	dppD	HEPCGN_14980	0.69	+0.2
1,755,710	-	dppD	HEPCGN_14980	0.69	-0.2
1,755,942	+				+0.5
1,755,942	+				-0.7
1,755,942	+				-0.1
1,755,943	-				-0.5
1,756,008	-				+0.1
1,756,088	+				-0.5
1,756,088	+				-0.3
1,756,088	+				+0.2
1,756,165	+	dppF	HEPCGN_14985	0.16	+0.3
1,756,168	+	dppF	HEPCGN_14985	0.16	-0.1
1,756,169	-	dppF	HEPCGN_14985	0.16	+0.4
1,756,246	-	dppF	HEPCGN_14985	0.24	+0.2
1,756,248	+	dppF	HEPCGN_14985	0.24	-0.6
1,756,333	-	dppF	HEPCGN_14985	0.32	+1.6
1,756,389	-	dppF	HEPCGN_14985	0.38	+0.5
1,756,389	-	dppF	HEPCGN_14985	0.38	-0.8
1,756,392	-	dppF	HEPCGN_14985	0.38	+0.1
1,756,402	+	dppF	HEPCGN_14985	0.39	+0.5
1,756,403	-	dppF	HEPCGN_14985	0.39	+2.2
1,756,471	-	dppF	HEPCGN_14985	0.46	+0.0
1,756,471	-	dppF	HEPCGN_14985	0.46	+0.2
1,756,650	+	dppF	HEPCGN_14985	0.64	-0.3
1,756,650	+	dppF	HEPCGN_14985	0.64	-0.4
1,756,651	-	dppF	HEPCGN_14985	0.64	-0.5
1,756,659	-	dppF	HEPCGN_14985	0.65	+0.5
1,756,714	-	dppF	HEPCGN_14985	0.70	+0.0
1,756,777	-	dppF	HEPCGN_14985	0.77	+0.3
1,757,010	+				+0.1
1,757,010	+				+0.3
1,757,011	-				-0.5
1,757,011	-				-0.1