Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10735 and HEPCGN_10740 are separated by 222 nucleotides HEPCGN_10740 and pgtA are separated by 42 nucleotides pgtA and pgtB overlap by 11 nucleotides
HEPCGN_10735: HEPCGN_10735 - DNA-binding protein, at 890,419 to 891,057
_10735
HEPCGN_10740: HEPCGN_10740 - hypothetical protein, at 891,280 to 891,723
_10740
HEPCGN_10745: pgtA - two-component system response regulator PgtA, at 891,766 to 893,013
pgtA
HEPCGN_10750: pgtB - two-component system sensor histidine kinase PgtB, at 893,003 to 895,012
pgtB
Position (kb) 891
892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 890.766 kb on - strand, within HEPCGN_10735 at 891.051 kb on + strand at 891.052 kb on - strand at 891.076 kb on + strand at 891.099 kb on + strand at 891.132 kb on - strand at 891.132 kb on - strand at 891.167 kb on - strand at 891.179 kb on - strand at 891.210 kb on + strand at 891.211 kb on - strand at 891.211 kb on - strand at 891.278 kb on + strand at 891.393 kb on - strand, within HEPCGN_10740 at 891.429 kb on - strand, within HEPCGN_10740 at 891.431 kb on + strand, within HEPCGN_10740 at 891.431 kb on + strand, within HEPCGN_10740 at 891.475 kb on + strand, within HEPCGN_10740 at 891.486 kb on - strand, within HEPCGN_10740 at 891.505 kb on + strand, within HEPCGN_10740 at 891.505 kb on + strand, within HEPCGN_10740 at 891.550 kb on - strand, within HEPCGN_10740 at 891.634 kb on + strand, within HEPCGN_10740 at 891.655 kb on + strand, within HEPCGN_10740 at 891.776 kb on + strand at 891.777 kb on - strand at 891.789 kb on + strand at 891.790 kb on - strand at 891.877 kb on - strand at 891.985 kb on + strand, within pgtA at 891.992 kb on - strand, within pgtA at 892.032 kb on + strand, within pgtA at 892.098 kb on + strand, within pgtA at 892.116 kb on + strand, within pgtA at 892.116 kb on + strand, within pgtA at 892.117 kb on - strand, within pgtA at 892.166 kb on - strand, within pgtA at 892.166 kb on - strand, within pgtA at 892.205 kb on + strand, within pgtA at 892.205 kb on + strand, within pgtA at 892.206 kb on - strand, within pgtA at 892.300 kb on + strand, within pgtA at 892.300 kb on + strand, within pgtA at 892.301 kb on - strand, within pgtA at 892.316 kb on + strand, within pgtA at 892.357 kb on + strand, within pgtA at 892.357 kb on + strand, within pgtA at 892.358 kb on - strand, within pgtA at 892.449 kb on + strand, within pgtA at 892.449 kb on + strand, within pgtA at 892.525 kb on - strand, within pgtA at 892.839 kb on + strand, within pgtA at 892.840 kb on - strand, within pgtA at 892.853 kb on - strand, within pgtA at 892.853 kb on - strand, within pgtA at 892.853 kb on - strand, within pgtA at 892.879 kb on + strand, within pgtA at 892.879 kb on + strand, within pgtA at 892.880 kb on - strand, within pgtA at 892.880 kb on - strand, within pgtA at 892.943 kb on - strand at 893.005 kb on - strand at 893.005 kb on - strand at 893.008 kb on + strand at 893.008 kb on + strand at 893.009 kb on - strand at 893.141 kb on + strand at 893.141 kb on + strand at 893.159 kb on - strand at 893.223 kb on - strand, within pgtB at 893.223 kb on - strand, within pgtB at 893.260 kb on + strand, within pgtB at 893.356 kb on + strand, within pgtB at 893.493 kb on - strand, within pgtB at 893.521 kb on + strand, within pgtB at 893.596 kb on + strand, within pgtB at 893.604 kb on + strand, within pgtB at 893.604 kb on + strand, within pgtB at 893.605 kb on - strand, within pgtB at 893.726 kb on + strand, within pgtB at 893.727 kb on - strand, within pgtB at 893.798 kb on + strand, within pgtB at 893.799 kb on - strand, within pgtB at 893.799 kb on - strand, within pgtB at 893.799 kb on - strand, within pgtB at 893.802 kb on - strand, within pgtB at 893.899 kb on + strand, within pgtB at 893.931 kb on + strand, within pgtB at 893.942 kb on + strand, within pgtB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 890,766 - HEPCGN_10735 0.54 -0.1 891,051 + +0.1 891,052 - +0.4 891,076 + +0.4 891,099 + +0.6 891,132 - -0.8 891,132 - -0.8 891,167 - +0.1 891,179 - +0.2 891,210 + -0.0 891,211 - -1.5 891,211 - +0.1 891,278 + -0.5 891,393 - HEPCGN_10740 0.25 +0.2 891,429 - HEPCGN_10740 0.34 +0.7 891,431 + HEPCGN_10740 0.34 +0.6 891,431 + HEPCGN_10740 0.34 -0.3 891,475 + HEPCGN_10740 0.44 +0.1 891,486 - HEPCGN_10740 0.46 -0.1 891,505 + HEPCGN_10740 0.51 +1.5 891,505 + HEPCGN_10740 0.51 -0.1 891,550 - HEPCGN_10740 0.61 -0.7 891,634 + HEPCGN_10740 0.80 -0.2 891,655 + HEPCGN_10740 0.84 -0.3 891,776 + +0.1 891,777 - +0.3 891,789 + -1.7 891,790 - +0.3 891,877 - +0.6 891,985 + pgtA HEPCGN_10745 0.18 -0.0 891,992 - pgtA HEPCGN_10745 0.18 -0.7 892,032 + pgtA HEPCGN_10745 0.21 +0.3 892,098 + pgtA HEPCGN_10745 0.27 -1.3 892,116 + pgtA HEPCGN_10745 0.28 +0.5 892,116 + pgtA HEPCGN_10745 0.28 -1.0 892,117 - pgtA HEPCGN_10745 0.28 +0.4 892,166 - pgtA HEPCGN_10745 0.32 -0.2 892,166 - pgtA HEPCGN_10745 0.32 -0.6 892,205 + pgtA HEPCGN_10745 0.35 -0.5 892,205 + pgtA HEPCGN_10745 0.35 -0.0 892,206 - pgtA HEPCGN_10745 0.35 -0.5 892,300 + pgtA HEPCGN_10745 0.43 -0.4 892,300 + pgtA HEPCGN_10745 0.43 +0.6 892,301 - pgtA HEPCGN_10745 0.43 +0.1 892,316 + pgtA HEPCGN_10745 0.44 +0.2 892,357 + pgtA HEPCGN_10745 0.47 +0.7 892,357 + pgtA HEPCGN_10745 0.47 -0.0 892,358 - pgtA HEPCGN_10745 0.47 -1.3 892,449 + pgtA HEPCGN_10745 0.55 +0.2 892,449 + pgtA HEPCGN_10745 0.55 -0.1 892,525 - pgtA HEPCGN_10745 0.61 +0.5 892,839 + pgtA HEPCGN_10745 0.86 -0.1 892,840 - pgtA HEPCGN_10745 0.86 +0.0 892,853 - pgtA HEPCGN_10745 0.87 -2.3 892,853 - pgtA HEPCGN_10745 0.87 -0.5 892,853 - pgtA HEPCGN_10745 0.87 -0.4 892,879 + pgtA HEPCGN_10745 0.89 +0.1 892,879 + pgtA HEPCGN_10745 0.89 +0.5 892,880 - pgtA HEPCGN_10745 0.89 +0.3 892,880 - pgtA HEPCGN_10745 0.89 +0.3 892,943 - +0.4 893,005 - -0.1 893,005 - -1.9 893,008 + +0.3 893,008 + +0.4 893,009 - +0.1 893,141 + +1.1 893,141 + -0.5 893,159 - +1.2 893,223 - pgtB HEPCGN_10750 0.11 -0.1 893,223 - pgtB HEPCGN_10750 0.11 -2.4 893,260 + pgtB HEPCGN_10750 0.13 -0.4 893,356 + pgtB HEPCGN_10750 0.18 +0.1 893,493 - pgtB HEPCGN_10750 0.24 -0.8 893,521 + pgtB HEPCGN_10750 0.26 +0.6 893,596 + pgtB HEPCGN_10750 0.30 +0.3 893,604 + pgtB HEPCGN_10750 0.30 +0.2 893,604 + pgtB HEPCGN_10750 0.30 -0.3 893,605 - pgtB HEPCGN_10750 0.30 +0.9 893,726 + pgtB HEPCGN_10750 0.36 +0.0 893,727 - pgtB HEPCGN_10750 0.36 -0.5 893,798 + pgtB HEPCGN_10750 0.40 -0.4 893,799 - pgtB HEPCGN_10750 0.40 +0.2 893,799 - pgtB HEPCGN_10750 0.40 +0.5 893,799 - pgtB HEPCGN_10750 0.40 +1.0 893,802 - pgtB HEPCGN_10750 0.40 -0.1 893,899 + pgtB HEPCGN_10750 0.45 +0.6 893,931 + pgtB HEPCGN_10750 0.46 +0.3 893,942 + pgtB HEPCGN_10750 0.47 -3.1
Or see this region's nucleotide sequence