Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt treB and treC are separated by 49 nucleotides treC and nrdD are separated by 393 nucleotides
HEPCGN_10090: treB - PTS trehalose transporter subunit IIBC, at 763,992 to 765,413
treB
HEPCGN_10095: treC - alpha,alpha-phosphotrehalase, at 765,463 to 767,118
treC
HEPCGN_10100: nrdD - anaerobic ribonucleoside-triphosphate reductase, at 767,512 to 769,650
nrdD
Position (kb) 765
766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.500 kb on - strand, within treB at 764.607 kb on + strand, within treB at 764.757 kb on + strand, within treB at 764.758 kb on - strand, within treB at 765.062 kb on - strand, within treB at 765.062 kb on - strand, within treB at 765.068 kb on + strand, within treB at 765.069 kb on - strand, within treB at 765.120 kb on - strand, within treB at 765.156 kb on + strand, within treB at 765.226 kb on + strand, within treB at 765.368 kb on + strand at 765.368 kb on + strand at 765.369 kb on - strand at 765.372 kb on + strand at 765.372 kb on + strand at 765.461 kb on + strand at 765.462 kb on - strand at 765.468 kb on + strand at 765.468 kb on + strand at 765.469 kb on - strand at 765.557 kb on + strand at 765.628 kb on + strand at 765.628 kb on + strand at 765.629 kb on - strand, within treC at 765.629 kb on - strand, within treC at 765.629 kb on - strand, within treC at 765.629 kb on - strand, within treC at 765.663 kb on - strand, within treC at 765.670 kb on + strand, within treC at 765.671 kb on - strand, within treC at 765.671 kb on - strand, within treC at 765.672 kb on + strand, within treC at 765.691 kb on + strand, within treC at 765.777 kb on + strand, within treC at 765.777 kb on + strand, within treC at 765.778 kb on - strand, within treC at 765.937 kb on + strand, within treC at 765.940 kb on + strand, within treC at 765.941 kb on - strand, within treC at 765.941 kb on - strand, within treC at 765.941 kb on - strand, within treC at 766.287 kb on + strand, within treC at 766.428 kb on + strand, within treC at 766.538 kb on - strand, within treC at 766.539 kb on + strand, within treC at 766.540 kb on - strand, within treC at 766.544 kb on - strand, within treC at 766.620 kb on + strand, within treC at 766.665 kb on - strand, within treC at 766.781 kb on - strand, within treC at 766.796 kb on + strand, within treC at 766.796 kb on + strand, within treC at 766.797 kb on - strand, within treC at 766.797 kb on - strand, within treC at 766.832 kb on - strand, within treC at 766.861 kb on - strand, within treC at 766.892 kb on - strand, within treC at 766.892 kb on - strand, within treC at 766.919 kb on + strand, within treC at 767.040 kb on + strand at 767.041 kb on - strand at 767.044 kb on + strand at 767.082 kb on - strand at 767.116 kb on + strand at 767.209 kb on - strand at 767.217 kb on + strand at 767.221 kb on + strand at 767.221 kb on + strand at 767.222 kb on - strand at 767.222 kb on - strand at 767.310 kb on + strand at 767.311 kb on - strand at 767.312 kb on + strand at 767.313 kb on - strand at 767.313 kb on - strand at 767.315 kb on - strand at 767.361 kb on + strand at 767.362 kb on - strand at 767.494 kb on + strand at 767.500 kb on + strand at 767.596 kb on - strand at 767.596 kb on - strand at 767.731 kb on + strand, within nrdD at 767.731 kb on + strand, within nrdD at 767.752 kb on + strand, within nrdD at 767.753 kb on - strand, within nrdD at 767.753 kb on - strand, within nrdD at 767.849 kb on + strand, within nrdD at 767.850 kb on - strand, within nrdD at 767.929 kb on + strand, within nrdD at 767.930 kb on - strand, within nrdD at 768.008 kb on - strand, within nrdD at 768.075 kb on + strand, within nrdD at 768.076 kb on - strand, within nrdD at 768.076 kb on - strand, within nrdD at 768.117 kb on + strand, within nrdD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 764,500 - treB HEPCGN_10090 0.36 -0.6 764,607 + treB HEPCGN_10090 0.43 +0.2 764,757 + treB HEPCGN_10090 0.54 +0.6 764,758 - treB HEPCGN_10090 0.54 +0.2 765,062 - treB HEPCGN_10090 0.75 +0.4 765,062 - treB HEPCGN_10090 0.75 -1.0 765,068 + treB HEPCGN_10090 0.76 -0.4 765,069 - treB HEPCGN_10090 0.76 +0.3 765,120 - treB HEPCGN_10090 0.79 +0.1 765,156 + treB HEPCGN_10090 0.82 +0.4 765,226 + treB HEPCGN_10090 0.87 +1.1 765,368 + -0.2 765,368 + -0.1 765,369 - -0.3 765,372 + +0.8 765,372 + +0.8 765,461 + +0.1 765,462 - +1.2 765,468 + -1.4 765,468 + -2.2 765,469 - +2.0 765,557 + -2.3 765,628 + -0.3 765,628 + +1.7 765,629 - treC HEPCGN_10095 0.10 +0.1 765,629 - treC HEPCGN_10095 0.10 -1.2 765,629 - treC HEPCGN_10095 0.10 -1.2 765,629 - treC HEPCGN_10095 0.10 -1.3 765,663 - treC HEPCGN_10095 0.12 -0.3 765,670 + treC HEPCGN_10095 0.12 +2.4 765,671 - treC HEPCGN_10095 0.13 -1.3 765,671 - treC HEPCGN_10095 0.13 -0.8 765,672 + treC HEPCGN_10095 0.13 -1.2 765,691 + treC HEPCGN_10095 0.14 -0.3 765,777 + treC HEPCGN_10095 0.19 +1.1 765,777 + treC HEPCGN_10095 0.19 +0.3 765,778 - treC HEPCGN_10095 0.19 -0.5 765,937 + treC HEPCGN_10095 0.29 -2.6 765,940 + treC HEPCGN_10095 0.29 -2.0 765,941 - treC HEPCGN_10095 0.29 +1.2 765,941 - treC HEPCGN_10095 0.29 -1.8 765,941 - treC HEPCGN_10095 0.29 -0.9 766,287 + treC HEPCGN_10095 0.50 +1.8 766,428 + treC HEPCGN_10095 0.58 +1.1 766,538 - treC HEPCGN_10095 0.65 -1.7 766,539 + treC HEPCGN_10095 0.65 +0.1 766,540 - treC HEPCGN_10095 0.65 -1.9 766,544 - treC HEPCGN_10095 0.65 +0.9 766,620 + treC HEPCGN_10095 0.70 -1.4 766,665 - treC HEPCGN_10095 0.73 +1.7 766,781 - treC HEPCGN_10095 0.80 -0.3 766,796 + treC HEPCGN_10095 0.80 -3.3 766,796 + treC HEPCGN_10095 0.80 -0.3 766,797 - treC HEPCGN_10095 0.81 +0.1 766,797 - treC HEPCGN_10095 0.81 -1.9 766,832 - treC HEPCGN_10095 0.83 -0.3 766,861 - treC HEPCGN_10095 0.84 -1.5 766,892 - treC HEPCGN_10095 0.86 -0.6 766,892 - treC HEPCGN_10095 0.86 +0.7 766,919 + treC HEPCGN_10095 0.88 -2.5 767,040 + -0.4 767,041 - +0.6 767,044 + -0.5 767,082 - +1.1 767,116 + +0.1 767,209 - +0.9 767,217 + +0.2 767,221 + -0.6 767,221 + -0.2 767,222 - -1.3 767,222 - +0.5 767,310 + -0.4 767,311 - +0.9 767,312 + -0.1 767,313 - +0.7 767,313 - +1.1 767,315 - -0.9 767,361 + -0.3 767,362 - +0.3 767,494 + -0.1 767,500 + +0.5 767,596 - +1.4 767,596 - -0.8 767,731 + nrdD HEPCGN_10100 0.10 +0.7 767,731 + nrdD HEPCGN_10100 0.10 -0.1 767,752 + nrdD HEPCGN_10100 0.11 +0.4 767,753 - nrdD HEPCGN_10100 0.11 -0.0 767,753 - nrdD HEPCGN_10100 0.11 -0.2 767,849 + nrdD HEPCGN_10100 0.16 -0.4 767,850 - nrdD HEPCGN_10100 0.16 -0.1 767,929 + nrdD HEPCGN_10100 0.19 -0.6 767,930 - nrdD HEPCGN_10100 0.20 +0.1 768,008 - nrdD HEPCGN_10100 0.23 +0.2 768,075 + nrdD HEPCGN_10100 0.26 +0.5 768,076 - nrdD HEPCGN_10100 0.26 +1.8 768,076 - nrdD HEPCGN_10100 0.26 -0.4 768,117 + nrdD HEPCGN_10100 0.28 +0.5
Or see this region's nucleotide sequence