Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argF and yfcC are separated by 56 nucleotides yfcC and HEPCGN_10055 are separated by 115 nucleotides HEPCGN_10055 and pyrB are separated by 227 nucleotides
HEPCGN_10045: argF - ornithine carbamoyltransferase, at 754,481 to 755,485
argF
HEPCGN_10050: yfcC - C4-dicarboxylate ABC transporter, at 755,542 to 756,945
yfcC
HEPCGN_10055: HEPCGN_10055 - ArgR family transcriptional regulator, at 757,061 to 757,549
_10055
HEPCGN_10060: pyrB - aspartate carbamoyltransferase, at 757,777 to 758,712
pyrB
Position (kb) 755
756
757 Strain fitness (log2 ratio) -1
0
1
2
3 at 754.709 kb on + strand, within argF at 754.710 kb on - strand, within argF at 754.710 kb on - strand, within argF at 754.710 kb on - strand, within argF at 754.710 kb on - strand, within argF at 754.710 kb on - strand, within argF at 754.784 kb on + strand, within argF at 754.784 kb on + strand, within argF at 754.784 kb on + strand, within argF at 754.785 kb on - strand, within argF at 754.785 kb on - strand, within argF at 754.785 kb on - strand, within argF at 754.819 kb on + strand, within argF at 754.833 kb on + strand, within argF at 754.833 kb on + strand, within argF at 754.834 kb on - strand, within argF at 754.908 kb on + strand, within argF at 754.965 kb on - strand, within argF at 755.152 kb on - strand, within argF at 755.154 kb on - strand, within argF at 755.173 kb on + strand, within argF at 755.244 kb on - strand, within argF at 755.296 kb on + strand, within argF at 755.297 kb on - strand, within argF at 755.337 kb on + strand, within argF at 755.337 kb on + strand, within argF at 755.414 kb on - strand at 755.466 kb on + strand at 755.466 kb on + strand at 755.466 kb on + strand at 755.466 kb on + strand at 755.541 kb on + strand at 755.571 kb on + strand at 755.689 kb on + strand, within yfcC at 755.689 kb on + strand, within yfcC at 755.690 kb on - strand, within yfcC at 755.690 kb on - strand, within yfcC at 755.718 kb on + strand, within yfcC at 755.719 kb on - strand, within yfcC at 755.721 kb on + strand, within yfcC at 755.755 kb on + strand, within yfcC at 755.755 kb on + strand, within yfcC at 755.831 kb on + strand, within yfcC at 755.831 kb on + strand, within yfcC at 755.831 kb on + strand, within yfcC at 755.832 kb on - strand, within yfcC at 755.834 kb on + strand, within yfcC at 755.835 kb on - strand, within yfcC at 755.852 kb on + strand, within yfcC at 755.853 kb on - strand, within yfcC at 755.946 kb on + strand, within yfcC at 755.947 kb on - strand, within yfcC at 755.981 kb on - strand, within yfcC at 755.981 kb on - strand, within yfcC at 756.047 kb on + strand, within yfcC at 756.167 kb on + strand, within yfcC at 756.171 kb on - strand, within yfcC at 756.171 kb on - strand, within yfcC at 756.175 kb on + strand, within yfcC at 756.364 kb on - strand, within yfcC at 756.659 kb on + strand, within yfcC at 756.717 kb on - strand, within yfcC at 756.746 kb on + strand, within yfcC at 756.746 kb on + strand, within yfcC at 756.747 kb on - strand, within yfcC at 756.772 kb on + strand, within yfcC at 756.796 kb on - strand, within yfcC at 756.796 kb on - strand, within yfcC at 756.913 kb on - strand at 757.013 kb on - strand at 757.038 kb on + strand at 757.044 kb on + strand at 757.048 kb on + strand at 757.060 kb on + strand at 757.140 kb on - strand, within HEPCGN_10055 at 757.252 kb on + strand, within HEPCGN_10055 at 757.349 kb on - strand, within HEPCGN_10055 at 757.493 kb on - strand, within HEPCGN_10055 at 757.570 kb on + strand at 757.638 kb on + strand at 757.638 kb on + strand at 757.638 kb on + strand at 757.638 kb on + strand at 757.639 kb on - strand at 757.639 kb on - strand at 757.639 kb on - strand at 757.791 kb on - strand at 757.804 kb on - strand at 757.840 kb on - strand at 757.840 kb on - strand at 757.909 kb on - strand, within pyrB at 757.909 kb on - strand, within pyrB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 754,709 + argF HEPCGN_10045 0.23 -0.1 754,710 - argF HEPCGN_10045 0.23 -0.8 754,710 - argF HEPCGN_10045 0.23 +1.4 754,710 - argF HEPCGN_10045 0.23 +0.1 754,710 - argF HEPCGN_10045 0.23 +0.6 754,710 - argF HEPCGN_10045 0.23 +0.9 754,784 + argF HEPCGN_10045 0.30 -0.3 754,784 + argF HEPCGN_10045 0.30 -0.0 754,784 + argF HEPCGN_10045 0.30 +0.4 754,785 - argF HEPCGN_10045 0.30 -0.1 754,785 - argF HEPCGN_10045 0.30 +0.6 754,785 - argF HEPCGN_10045 0.30 -0.1 754,819 + argF HEPCGN_10045 0.34 +1.1 754,833 + argF HEPCGN_10045 0.35 +0.3 754,833 + argF HEPCGN_10045 0.35 +0.4 754,834 - argF HEPCGN_10045 0.35 +0.6 754,908 + argF HEPCGN_10045 0.42 +0.4 754,965 - argF HEPCGN_10045 0.48 -0.0 755,152 - argF HEPCGN_10045 0.67 +0.5 755,154 - argF HEPCGN_10045 0.67 -0.5 755,173 + argF HEPCGN_10045 0.69 -0.2 755,244 - argF HEPCGN_10045 0.76 +1.6 755,296 + argF HEPCGN_10045 0.81 -0.1 755,297 - argF HEPCGN_10045 0.81 +0.2 755,337 + argF HEPCGN_10045 0.85 +0.8 755,337 + argF HEPCGN_10045 0.85 -0.3 755,414 - +0.3 755,466 + -0.2 755,466 + +0.4 755,466 + +0.0 755,466 + -0.1 755,541 + +1.2 755,571 + -0.7 755,689 + yfcC HEPCGN_10050 0.10 +0.1 755,689 + yfcC HEPCGN_10050 0.10 -0.1 755,690 - yfcC HEPCGN_10050 0.11 -0.7 755,690 - yfcC HEPCGN_10050 0.11 +0.5 755,718 + yfcC HEPCGN_10050 0.13 +0.4 755,719 - yfcC HEPCGN_10050 0.13 +0.6 755,721 + yfcC HEPCGN_10050 0.13 -1.7 755,755 + yfcC HEPCGN_10050 0.15 -0.4 755,755 + yfcC HEPCGN_10050 0.15 +0.4 755,831 + yfcC HEPCGN_10050 0.21 -0.2 755,831 + yfcC HEPCGN_10050 0.21 +0.3 755,831 + yfcC HEPCGN_10050 0.21 +0.1 755,832 - yfcC HEPCGN_10050 0.21 +0.2 755,834 + yfcC HEPCGN_10050 0.21 +0.2 755,835 - yfcC HEPCGN_10050 0.21 +0.6 755,852 + yfcC HEPCGN_10050 0.22 +0.8 755,853 - yfcC HEPCGN_10050 0.22 +0.4 755,946 + yfcC HEPCGN_10050 0.29 +0.6 755,947 - yfcC HEPCGN_10050 0.29 +0.4 755,981 - yfcC HEPCGN_10050 0.31 -0.0 755,981 - yfcC HEPCGN_10050 0.31 +0.0 756,047 + yfcC HEPCGN_10050 0.36 +0.4 756,167 + yfcC HEPCGN_10050 0.45 +0.5 756,171 - yfcC HEPCGN_10050 0.45 +0.0 756,171 - yfcC HEPCGN_10050 0.45 +3.2 756,175 + yfcC HEPCGN_10050 0.45 +0.0 756,364 - yfcC HEPCGN_10050 0.59 +1.0 756,659 + yfcC HEPCGN_10050 0.80 +0.1 756,717 - yfcC HEPCGN_10050 0.84 +0.5 756,746 + yfcC HEPCGN_10050 0.86 -0.6 756,746 + yfcC HEPCGN_10050 0.86 +0.7 756,747 - yfcC HEPCGN_10050 0.86 -0.0 756,772 + yfcC HEPCGN_10050 0.88 -0.2 756,796 - yfcC HEPCGN_10050 0.89 -0.4 756,796 - yfcC HEPCGN_10050 0.89 -0.4 756,913 - +0.2 757,013 - +1.8 757,038 + +2.9 757,044 + +3.6 757,048 + +1.5 757,060 + +1.0 757,140 - HEPCGN_10055 0.16 -0.0 757,252 + HEPCGN_10055 0.39 -0.2 757,349 - HEPCGN_10055 0.59 +0.1 757,493 - HEPCGN_10055 0.88 -1.3 757,570 + -0.3 757,638 + +0.5 757,638 + -1.0 757,638 + -0.1 757,638 + +0.9 757,639 - -0.2 757,639 - +0.9 757,639 - +0.6 757,791 - +1.5 757,804 - -0.7 757,840 - +0.2 757,840 - +0.3 757,909 - pyrB HEPCGN_10060 0.14 +0.4 757,909 - pyrB HEPCGN_10060 0.14 -0.8
Or see this region's nucleotide sequence