Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05675

Experiment: Bas39

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas39
1,007,318	+	ldtE	HEPCGN_05665	0.75	+1.4
1,007,319	-	ldtE	HEPCGN_05665	0.75	-0.8
1,007,319	-	ldtE	HEPCGN_05665	0.75	-0.9
1,007,331	-	ldtE	HEPCGN_05665	0.76	-0.1
1,007,443	+	ldtE	HEPCGN_05665	0.87	+1.0
1,007,514	-				-3.2
1,007,551	-				-0.9
1,007,570	-				+0.6
1,007,580	-				-0.0
1,007,754	-	lpp	HEPCGN_05670	0.51	-0.8
1,007,826	-	lpp	HEPCGN_05670	0.81	-1.6
1,007,826	-	lpp	HEPCGN_05670	0.81	-1.4
1,007,875	-				-1.0
1,007,875	-				-3.4
1,007,894	+				-0.1
1,007,906	-				-0.2
1,008,077	-				+0.2
1,008,077	-				+0.1
1,008,211	-				-2.0
1,008,248	-				-0.3
1,008,248	-				+0.2
1,008,319	-				-1.8
1,008,319	-				+0.2
1,008,425	+	pykF	HEPCGN_05675	0.17	+0.4
1,008,679	-	pykF	HEPCGN_05675	0.35	+0.4
1,009,014	+	pykF	HEPCGN_05675	0.59	+2.6
1,009,535	-				-1.6
1,009,697	-				-0.1
1,009,895	-				-0.4
1,010,021	-				+0.1
1,010,025	-				-0.2
1,010,025	-				+1.2
1,010,049	+				-0.5
1,010,112	+				+1.1
1,010,115	-				-0.5
1,010,115	-				+0.2
1,010,122	+				+0.7
1,010,143	-				+0.2
1,010,251	+	fumD	HEPCGN_05680	0.48	-0.3
1,010,252	-	fumD	HEPCGN_05680	0.49	+0.1
1,010,271	+	fumD	HEPCGN_05680	0.58	+0.8
1,010,271	+	fumD	HEPCGN_05680	0.58	+0.1
1,010,433	-				+1.0