Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt btuC and btuE are separated by 62 nucleotides btuE and btuD overlap by 1 nucleotides btuD and nlpC are separated by 77 nucleotides nlpC and ydiV are separated by 246 nucleotides
HEPCGN_05465: btuC - vitamin B12 ABC transporter permease BtuC, at 966,022 to 967,002
btuC
HEPCGN_05470: btuE - bifunctional thioredoxin/glutathione peroxidase, at 967,065 to 967,616
btuE
HEPCGN_05475: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 967,616 to 968,365
btuD
HEPCGN_05480: nlpC - putative endopeptidase NlpC, at 968,443 to 968,907
nlpC
HEPCGN_05485: ydiV - anti-FlhDC factor, at 969,154 to 969,867
ydiV
Position (kb) 967
968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 966.657 kb on + strand, within btuC at 966.657 kb on + strand, within btuC at 966.658 kb on - strand, within btuC at 966.845 kb on + strand, within btuC at 966.845 kb on + strand, within btuC at 966.846 kb on - strand, within btuC at 966.846 kb on - strand, within btuC at 966.914 kb on + strand at 966.987 kb on - strand at 967.020 kb on - strand at 967.020 kb on - strand at 967.131 kb on + strand, within btuE at 967.192 kb on - strand, within btuE at 967.302 kb on - strand, within btuE at 967.309 kb on - strand, within btuE at 967.480 kb on - strand, within btuE at 967.480 kb on - strand, within btuE at 967.614 kb on + strand at 967.621 kb on + strand at 967.741 kb on - strand, within btuD at 968.079 kb on + strand, within btuD at 968.200 kb on + strand, within btuD at 968.200 kb on + strand, within btuD at 968.201 kb on - strand, within btuD at 968.372 kb on + strand at 968.373 kb on - strand at 968.721 kb on + strand, within nlpC at 968.790 kb on - strand, within nlpC at 968.798 kb on - strand, within nlpC at 968.909 kb on - strand at 968.950 kb on - strand at 968.960 kb on - strand at 968.968 kb on - strand at 969.026 kb on - strand at 969.026 kb on - strand at 969.089 kb on - strand at 969.213 kb on + strand at 969.242 kb on + strand, within ydiV at 969.246 kb on + strand, within ydiV at 969.300 kb on - strand, within ydiV
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 966,657 + btuC HEPCGN_05465 0.65 -0.2 966,657 + btuC HEPCGN_05465 0.65 +1.2 966,658 - btuC HEPCGN_05465 0.65 +0.5 966,845 + btuC HEPCGN_05465 0.84 -0.2 966,845 + btuC HEPCGN_05465 0.84 +1.0 966,846 - btuC HEPCGN_05465 0.84 +0.8 966,846 - btuC HEPCGN_05465 0.84 -1.3 966,914 + +0.1 966,987 - +0.2 967,020 - -0.4 967,020 - +0.8 967,131 + btuE HEPCGN_05470 0.12 +1.4 967,192 - btuE HEPCGN_05470 0.23 -1.6 967,302 - btuE HEPCGN_05470 0.43 +0.2 967,309 - btuE HEPCGN_05470 0.44 +0.4 967,480 - btuE HEPCGN_05470 0.75 -0.7 967,480 - btuE HEPCGN_05470 0.75 -0.1 967,614 + +2.0 967,621 + +0.6 967,741 - btuD HEPCGN_05475 0.17 -2.4 968,079 + btuD HEPCGN_05475 0.62 -2.0 968,200 + btuD HEPCGN_05475 0.78 +0.5 968,200 + btuD HEPCGN_05475 0.78 +0.9 968,201 - btuD HEPCGN_05475 0.78 -2.3 968,372 + +0.6 968,373 - +0.1 968,721 + nlpC HEPCGN_05480 0.60 -0.1 968,790 - nlpC HEPCGN_05480 0.75 +0.6 968,798 - nlpC HEPCGN_05480 0.76 -0.6 968,909 - -1.6 968,950 - +0.1 968,960 - -2.3 968,968 - +0.1 969,026 - -0.6 969,026 - +0.0 969,089 - +1.4 969,213 + -0.4 969,242 + ydiV HEPCGN_05485 0.12 +0.1 969,246 + ydiV HEPCGN_05485 0.13 +0.0 969,300 - ydiV HEPCGN_05485 0.20 -2.8
Or see this region's nucleotide sequence