Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05280

Experiment: Bas39

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntastA and astD overlap by 4 nucleotidesastD and astB overlap by 4 nucleotides HEPCGN_05275: astA - arginine N-succinyltransferase, at 931,046 to 932,080 astA HEPCGN_05280: astD - succinylglutamate-semialdehyde dehydrogenase, at 932,077 to 933,555 astD HEPCGN_05285: astB - N-succinylarginine dihydrolase, at 933,552 to 934,895 astB Position (kb) 932 933 934Strain fitness (log2 ratio) -1 0 1at 931.304 kb on + strand, within astAat 931.357 kb on + strand, within astAat 931.481 kb on - strand, within astAat 931.487 kb on - strand, within astAat 931.487 kb on - strand, within astAat 931.560 kb on - strand, within astAat 931.682 kb on + strand, within astAat 931.682 kb on + strand, within astAat 931.683 kb on - strand, within astAat 931.684 kb on + strand, within astAat 931.786 kb on + strand, within astAat 931.790 kb on + strand, within astAat 931.790 kb on + strand, within astAat 931.790 kb on + strand, within astAat 931.793 kb on - strand, within astAat 932.137 kb on - strandat 932.264 kb on + strand, within astDat 932.302 kb on - strand, within astDat 932.385 kb on + strand, within astDat 932.410 kb on + strand, within astDat 932.411 kb on - strand, within astDat 932.562 kb on + strand, within astDat 932.563 kb on - strand, within astDat 932.625 kb on - strand, within astDat 933.027 kb on + strand, within astDat 933.126 kb on - strand, within astDat 933.128 kb on + strand, within astDat 933.458 kb on - strandat 933.516 kb on + strandat 933.758 kb on + strand, within astBat 933.758 kb on + strand, within astBat 933.805 kb on + strand, within astBat 933.805 kb on + strand, within astBat 933.806 kb on - strand, within astBat 934.086 kb on + strand, within astBat 934.087 kb on - strand, within astBat 934.108 kb on - strand, within astBat 934.295 kb on + strand, within astBat 934.369 kb on + strand, within astBat 934.454 kb on + strand, within astBat 934.455 kb on - strand, within astBat 934.455 kb on - strand, within astBat 934.458 kb on + strand, within astBat 934.458 kb on + strand, within astBat 934.459 kb on - strand, within astBat 934.459 kb on - strand, within astBat 934.543 kb on + strand, within astBat 934.552 kb on - strand, within astB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas39
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931,304 + astA HEPCGN_05275 0.25 -0.1
931,357 + astA HEPCGN_05275 0.30 +0.1
931,481 - astA HEPCGN_05275 0.42 -0.0
931,487 - astA HEPCGN_05275 0.43 -0.1
931,487 - astA HEPCGN_05275 0.43 -0.1
931,560 - astA HEPCGN_05275 0.50 +0.4
931,682 + astA HEPCGN_05275 0.61 +1.0
931,682 + astA HEPCGN_05275 0.61 +0.0
931,683 - astA HEPCGN_05275 0.62 -0.9
931,684 + astA HEPCGN_05275 0.62 +0.5
931,786 + astA HEPCGN_05275 0.71 -0.3
931,790 + astA HEPCGN_05275 0.72 -0.4
931,790 + astA HEPCGN_05275 0.72 +0.3
931,790 + astA HEPCGN_05275 0.72 -0.6
931,793 - astA HEPCGN_05275 0.72 -0.2
932,137 - -0.7
932,264 + astD HEPCGN_05280 0.13 -0.5
932,302 - astD HEPCGN_05280 0.15 +0.2
932,385 + astD HEPCGN_05280 0.21 +0.9
932,410 + astD HEPCGN_05280 0.23 -0.6
932,411 - astD HEPCGN_05280 0.23 +0.7
932,562 + astD HEPCGN_05280 0.33 +0.1
932,563 - astD HEPCGN_05280 0.33 +0.5
932,625 - astD HEPCGN_05280 0.37 -1.0
933,027 + astD HEPCGN_05280 0.64 +0.8
933,126 - astD HEPCGN_05280 0.71 -0.3
933,128 + astD HEPCGN_05280 0.71 +0.4
933,458 - -0.2
933,516 + -1.4
933,758 + astB HEPCGN_05285 0.15 -0.0
933,758 + astB HEPCGN_05285 0.15 -0.6
933,805 + astB HEPCGN_05285 0.19 +0.4
933,805 + astB HEPCGN_05285 0.19 -0.5
933,806 - astB HEPCGN_05285 0.19 +0.1
934,086 + astB HEPCGN_05285 0.40 +0.3
934,087 - astB HEPCGN_05285 0.40 -0.7
934,108 - astB HEPCGN_05285 0.41 -0.0
934,295 + astB HEPCGN_05285 0.55 -0.9
934,369 + astB HEPCGN_05285 0.61 -0.3
934,454 + astB HEPCGN_05285 0.67 +0.8
934,455 - astB HEPCGN_05285 0.67 +1.0
934,455 - astB HEPCGN_05285 0.67 -0.9
934,458 + astB HEPCGN_05285 0.67 +0.3
934,458 + astB HEPCGN_05285 0.67 +0.3
934,459 - astB HEPCGN_05285 0.67 +0.4
934,459 - astB HEPCGN_05285 0.67 -1.0
934,543 + astB HEPCGN_05285 0.74 +0.5
934,552 - astB HEPCGN_05285 0.74 -1.0

Or see this region's nucleotide sequence