Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msrC and proQ are separated by 96 nucleotides proQ and prc are separated by 19 nucleotides prc and htpX are separated by 191 nucleotides
HEPCGN_04855: msrC - L-methionine (R)-S-oxide reductase, at 846,621 to 847,172
msrC
HEPCGN_04860: proQ - RNA chaperone ProQ, at 847,269 to 847,967
proQ
HEPCGN_04865: prc - carboxy terminal-processing peptidase, at 847,987 to 850,035
prc
HEPCGN_04870: htpX - protease HtpX, at 850,227 to 851,108
htpX
Position (kb) 847
848
849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 847.050 kb on - strand, within msrC at 847.094 kb on - strand, within msrC at 847.186 kb on + strand at 847.186 kb on + strand at 847.186 kb on + strand at 847.186 kb on + strand at 847.210 kb on + strand at 847.243 kb on + strand at 847.254 kb on + strand at 847.284 kb on - strand at 847.284 kb on - strand at 847.284 kb on - strand at 847.306 kb on + strand at 847.458 kb on + strand, within proQ at 848.001 kb on + strand at 848.054 kb on + strand at 848.091 kb on - strand at 848.225 kb on - strand, within prc at 848.297 kb on + strand, within prc at 848.297 kb on + strand, within prc at 848.422 kb on + strand, within prc at 848.422 kb on + strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.423 kb on - strand, within prc at 848.424 kb on + strand, within prc at 848.662 kb on - strand, within prc at 848.727 kb on + strand, within prc at 848.758 kb on + strand, within prc at 848.759 kb on - strand, within prc at 848.766 kb on + strand, within prc at 848.811 kb on + strand, within prc at 848.907 kb on + strand, within prc at 848.978 kb on + strand, within prc at 848.997 kb on + strand, within prc at 849.082 kb on + strand, within prc at 849.166 kb on - strand, within prc at 849.414 kb on + strand, within prc at 849.450 kb on + strand, within prc at 849.454 kb on + strand, within prc at 849.455 kb on - strand, within prc at 849.455 kb on - strand, within prc at 849.467 kb on + strand, within prc at 849.467 kb on + strand, within prc at 849.468 kb on - strand, within prc at 849.468 kb on - strand, within prc at 849.549 kb on + strand, within prc at 849.658 kb on + strand, within prc at 849.658 kb on + strand, within prc at 849.658 kb on + strand, within prc at 849.711 kb on + strand, within prc at 849.711 kb on + strand, within prc at 849.795 kb on + strand, within prc at 849.811 kb on + strand, within prc at 849.949 kb on + strand at 849.949 kb on + strand at 850.033 kb on + strand at 850.090 kb on + strand at 850.103 kb on - strand at 850.103 kb on - strand at 850.103 kb on - strand at 850.136 kb on - strand at 850.166 kb on + strand at 850.191 kb on + strand at 850.306 kb on + strand at 850.306 kb on + strand at 850.402 kb on + strand, within htpX at 850.466 kb on + strand, within htpX at 850.471 kb on + strand, within htpX at 850.521 kb on + strand, within htpX at 850.521 kb on + strand, within htpX at 850.809 kb on + strand, within htpX at 850.810 kb on - strand, within htpX at 850.862 kb on + strand, within htpX
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 847,050 - msrC HEPCGN_04855 0.78 +0.2 847,094 - msrC HEPCGN_04855 0.86 +2.0 847,186 + -0.0 847,186 + +0.0 847,186 + -0.7 847,186 + +0.8 847,210 + -0.3 847,243 + +0.9 847,254 + -0.6 847,284 - -0.2 847,284 - +0.7 847,284 - -0.2 847,306 + -0.4 847,458 + proQ HEPCGN_04860 0.27 -0.5 848,001 + +0.1 848,054 + +1.0 848,091 - -2.0 848,225 - prc HEPCGN_04865 0.12 -3.0 848,297 + prc HEPCGN_04865 0.15 -2.0 848,297 + prc HEPCGN_04865 0.15 -1.2 848,422 + prc HEPCGN_04865 0.21 -2.1 848,422 + prc HEPCGN_04865 0.21 -1.9 848,423 - prc HEPCGN_04865 0.21 -0.6 848,423 - prc HEPCGN_04865 0.21 -0.1 848,423 - prc HEPCGN_04865 0.21 -1.1 848,423 - prc HEPCGN_04865 0.21 -2.3 848,423 - prc HEPCGN_04865 0.21 +2.0 848,424 + prc HEPCGN_04865 0.21 -0.1 848,662 - prc HEPCGN_04865 0.33 -0.7 848,727 + prc HEPCGN_04865 0.36 -0.2 848,758 + prc HEPCGN_04865 0.38 +0.4 848,759 - prc HEPCGN_04865 0.38 -1.0 848,766 + prc HEPCGN_04865 0.38 -0.3 848,811 + prc HEPCGN_04865 0.40 -1.0 848,907 + prc HEPCGN_04865 0.45 -2.9 848,978 + prc HEPCGN_04865 0.48 -1.0 848,997 + prc HEPCGN_04865 0.49 +0.2 849,082 + prc HEPCGN_04865 0.53 -0.3 849,166 - prc HEPCGN_04865 0.58 -1.6 849,414 + prc HEPCGN_04865 0.70 -0.6 849,450 + prc HEPCGN_04865 0.71 -1.0 849,454 + prc HEPCGN_04865 0.72 -0.7 849,455 - prc HEPCGN_04865 0.72 -0.8 849,455 - prc HEPCGN_04865 0.72 +0.0 849,467 + prc HEPCGN_04865 0.72 -2.3 849,467 + prc HEPCGN_04865 0.72 -0.4 849,468 - prc HEPCGN_04865 0.72 -1.1 849,468 - prc HEPCGN_04865 0.72 -2.0 849,549 + prc HEPCGN_04865 0.76 -0.3 849,658 + prc HEPCGN_04865 0.82 -1.0 849,658 + prc HEPCGN_04865 0.82 -0.4 849,658 + prc HEPCGN_04865 0.82 -0.5 849,711 + prc HEPCGN_04865 0.84 -0.9 849,711 + prc HEPCGN_04865 0.84 -0.9 849,795 + prc HEPCGN_04865 0.88 -0.5 849,811 + prc HEPCGN_04865 0.89 -1.2 849,949 + -1.0 849,949 + +0.7 850,033 + +0.6 850,090 + +0.2 850,103 - -0.6 850,103 - +1.4 850,103 - +0.6 850,136 - +0.1 850,166 + +0.9 850,191 + +0.4 850,306 + -0.2 850,306 + -1.1 850,402 + htpX HEPCGN_04870 0.20 +0.2 850,466 + htpX HEPCGN_04870 0.27 -0.2 850,471 + htpX HEPCGN_04870 0.28 +0.5 850,521 + htpX HEPCGN_04870 0.33 -0.2 850,521 + htpX HEPCGN_04870 0.33 +1.0 850,809 + htpX HEPCGN_04870 0.66 +1.0 850,810 - htpX HEPCGN_04870 0.66 +0.2 850,862 + htpX HEPCGN_04870 0.72 -0.2
Or see this region's nucleotide sequence