Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxM and pyk are separated by 131 nucleotides pyk and hexR are separated by 127 nucleotides
HEPCGN_04720: lpxM - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 822,615 to 823,586
lpxM
HEPCGN_04725: pyk - pyruvate kinase, at 823,718 to 825,160
pyk
HEPCGN_04730: hexR - DNA-binding transcriptional regulator HexR, at 825,288 to 826,157
hexR
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -2
-1
0
1
2 at 822.845 kb on + strand, within lpxM at 823.208 kb on - strand, within lpxM at 823.231 kb on - strand, within lpxM at 823.231 kb on - strand, within lpxM at 823.290 kb on + strand, within lpxM at 823.291 kb on - strand, within lpxM at 823.500 kb on + strand at 823.554 kb on + strand at 823.555 kb on - strand at 823.715 kb on + strand at 823.719 kb on + strand at 823.719 kb on + strand at 823.719 kb on + strand at 823.725 kb on - strand at 823.736 kb on - strand at 823.747 kb on + strand at 823.748 kb on - strand at 823.812 kb on + strand at 823.812 kb on + strand at 823.813 kb on - strand at 823.903 kb on - strand, within pyk at 823.924 kb on + strand, within pyk at 824.049 kb on + strand, within pyk at 824.111 kb on - strand, within pyk at 824.424 kb on - strand, within pyk at 824.545 kb on - strand, within pyk at 824.587 kb on - strand, within pyk at 824.614 kb on + strand, within pyk at 824.677 kb on + strand, within pyk at 824.820 kb on + strand, within pyk at 824.918 kb on - strand, within pyk at 824.927 kb on + strand, within pyk at 825.094 kb on + strand at 825.162 kb on + strand at 825.162 kb on + strand at 825.162 kb on + strand at 825.162 kb on + strand at 825.162 kb on + strand at 825.163 kb on - strand at 825.163 kb on - strand at 825.163 kb on - strand at 825.163 kb on - strand at 825.166 kb on - strand at 825.219 kb on + strand at 825.260 kb on + strand at 825.309 kb on - strand at 825.313 kb on - strand at 825.417 kb on + strand, within hexR at 825.418 kb on - strand, within hexR at 825.418 kb on - strand, within hexR at 825.455 kb on + strand, within hexR at 825.455 kb on + strand, within hexR at 825.456 kb on - strand, within hexR at 825.456 kb on - strand, within hexR at 825.456 kb on - strand, within hexR at 825.457 kb on + strand, within hexR at 825.457 kb on + strand, within hexR at 825.457 kb on + strand, within hexR at 825.458 kb on - strand, within hexR at 825.468 kb on - strand, within hexR at 825.544 kb on - strand, within hexR at 825.549 kb on - strand, within hexR at 825.605 kb on + strand, within hexR at 825.648 kb on - strand, within hexR at 825.648 kb on - strand, within hexR at 825.671 kb on + strand, within hexR at 825.699 kb on - strand, within hexR at 825.713 kb on + strand, within hexR at 825.750 kb on + strand, within hexR at 825.920 kb on - strand, within hexR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 822,845 + lpxM HEPCGN_04720 0.24 -2.3 823,208 - lpxM HEPCGN_04720 0.61 -1.0 823,231 - lpxM HEPCGN_04720 0.63 -2.1 823,231 - lpxM HEPCGN_04720 0.63 +0.8 823,290 + lpxM HEPCGN_04720 0.69 -0.5 823,291 - lpxM HEPCGN_04720 0.70 -2.5 823,500 + -0.5 823,554 + -0.6 823,555 - -1.5 823,715 + -0.3 823,719 + +0.3 823,719 + -0.9 823,719 + -0.9 823,725 - +0.5 823,736 - +1.1 823,747 + -0.3 823,748 - +0.1 823,812 + -0.1 823,812 + -0.1 823,813 - +0.1 823,903 - pyk HEPCGN_04725 0.13 +0.3 823,924 + pyk HEPCGN_04725 0.14 +0.9 824,049 + pyk HEPCGN_04725 0.23 +2.3 824,111 - pyk HEPCGN_04725 0.27 +0.1 824,424 - pyk HEPCGN_04725 0.49 -0.1 824,545 - pyk HEPCGN_04725 0.57 +0.2 824,587 - pyk HEPCGN_04725 0.60 -0.1 824,614 + pyk HEPCGN_04725 0.62 -0.0 824,677 + pyk HEPCGN_04725 0.66 +0.2 824,820 + pyk HEPCGN_04725 0.76 +0.0 824,918 - pyk HEPCGN_04725 0.83 +0.5 824,927 + pyk HEPCGN_04725 0.84 +1.4 825,094 + +0.0 825,162 + +0.9 825,162 + +0.4 825,162 + +0.1 825,162 + +0.6 825,162 + +0.7 825,163 - -0.4 825,163 - -2.5 825,163 - +0.7 825,163 - -0.2 825,166 - +2.5 825,219 + +0.4 825,260 + -0.4 825,309 - -0.3 825,313 - -0.3 825,417 + hexR HEPCGN_04730 0.15 -0.4 825,418 - hexR HEPCGN_04730 0.15 -0.5 825,418 - hexR HEPCGN_04730 0.15 +1.0 825,455 + hexR HEPCGN_04730 0.19 +1.0 825,455 + hexR HEPCGN_04730 0.19 -0.1 825,456 - hexR HEPCGN_04730 0.19 +0.2 825,456 - hexR HEPCGN_04730 0.19 +0.1 825,456 - hexR HEPCGN_04730 0.19 +1.1 825,457 + hexR HEPCGN_04730 0.19 -0.6 825,457 + hexR HEPCGN_04730 0.19 -0.5 825,457 + hexR HEPCGN_04730 0.19 -0.5 825,458 - hexR HEPCGN_04730 0.20 -0.4 825,468 - hexR HEPCGN_04730 0.21 -0.3 825,544 - hexR HEPCGN_04730 0.29 +0.1 825,549 - hexR HEPCGN_04730 0.30 +2.2 825,605 + hexR HEPCGN_04730 0.36 +0.1 825,648 - hexR HEPCGN_04730 0.41 +1.5 825,648 - hexR HEPCGN_04730 0.41 -0.1 825,671 + hexR HEPCGN_04730 0.44 +0.4 825,699 - hexR HEPCGN_04730 0.47 +0.1 825,713 + hexR HEPCGN_04730 0.49 -0.2 825,750 + hexR HEPCGN_04730 0.53 +0.3 825,920 - hexR HEPCGN_04730 0.73 -0.7
Or see this region's nucleotide sequence