Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04320

Experiment: Bas39

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_04305 and HEPCGN_04310 are separated by 2 nucleotidesHEPCGN_04310 and HEPCGN_04315 overlap by 1 nucleotidesHEPCGN_04315 and HEPCGN_04320 are separated by 103 nucleotidesHEPCGN_04320 and HEPCGN_04325 are separated by 45 nucleotides HEPCGN_04305: HEPCGN_04305 - holin, at 754,604 to 754,927 _04305 HEPCGN_04310: HEPCGN_04310 - phage tail protein, at 754,930 to 755,130 _04310 HEPCGN_04315: HEPCGN_04315 - capsid assembly protein, at 755,130 to 755,624 _04315 HEPCGN_04320: HEPCGN_04320 - terminase, at 755,728 to 756,528 _04320 HEPCGN_04325: HEPCGN_04325 - phage major capsid protein, P2 family, at 756,574 to 757,626 _04325 Position (kb) 755 756 757Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 754.857 kb on + strand, within HEPCGN_04305at 754.857 kb on + strand, within HEPCGN_04305at 754.857 kb on + strand, within HEPCGN_04305at 754.858 kb on - strand, within HEPCGN_04305at 754.858 kb on - strand, within HEPCGN_04305at 755.075 kb on + strand, within HEPCGN_04310at 755.214 kb on + strand, within HEPCGN_04315at 755.215 kb on - strand, within HEPCGN_04315at 755.215 kb on - strand, within HEPCGN_04315at 755.300 kb on + strand, within HEPCGN_04315at 755.302 kb on + strand, within HEPCGN_04315at 755.349 kb on + strand, within HEPCGN_04315at 755.350 kb on - strand, within HEPCGN_04315at 755.618 kb on + strandat 756.007 kb on + strand, within HEPCGN_04320at 756.008 kb on - strand, within HEPCGN_04320at 756.209 kb on + strand, within HEPCGN_04320at 756.209 kb on + strand, within HEPCGN_04320at 756.210 kb on - strand, within HEPCGN_04320at 756.210 kb on - strand, within HEPCGN_04320at 756.210 kb on - strand, within HEPCGN_04320at 756.210 kb on - strand, within HEPCGN_04320at 756.210 kb on - strand, within HEPCGN_04320at 756.210 kb on - strand, within HEPCGN_04320at 756.278 kb on - strand, within HEPCGN_04320at 756.278 kb on - strand, within HEPCGN_04320at 756.419 kb on + strand, within HEPCGN_04320at 756.420 kb on - strand, within HEPCGN_04320at 756.522 kb on + strandat 756.522 kb on + strandat 756.575 kb on + strandat 756.576 kb on - strandat 756.675 kb on - strandat 756.750 kb on + strand, within HEPCGN_04325at 756.839 kb on - strand, within HEPCGN_04325at 757.001 kb on + strand, within HEPCGN_04325at 757.001 kb on + strand, within HEPCGN_04325at 757.002 kb on - strand, within HEPCGN_04325at 757.218 kb on + strand, within HEPCGN_04325at 757.258 kb on - strand, within HEPCGN_04325at 757.258 kb on - strand, within HEPCGN_04325at 757.279 kb on - strand, within HEPCGN_04325at 757.290 kb on - strand, within HEPCGN_04325at 757.290 kb on - strand, within HEPCGN_04325at 757.290 kb on - strand, within HEPCGN_04325at 757.367 kb on + strand, within HEPCGN_04325at 757.374 kb on + strand, within HEPCGN_04325at 757.449 kb on + strand, within HEPCGN_04325at 757.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas39
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754,857 + HEPCGN_04305 0.78 -0.3
754,857 + HEPCGN_04305 0.78 +0.2
754,857 + HEPCGN_04305 0.78 +0.2
754,858 - HEPCGN_04305 0.78 -2.5
754,858 - HEPCGN_04305 0.78 -1.7
755,075 + HEPCGN_04310 0.72 +0.3
755,214 + HEPCGN_04315 0.17 +0.5
755,215 - HEPCGN_04315 0.17 -3.1
755,215 - HEPCGN_04315 0.17 -3.1
755,300 + HEPCGN_04315 0.34 +0.3
755,302 + HEPCGN_04315 0.35 +0.3
755,349 + HEPCGN_04315 0.44 +0.3
755,350 - HEPCGN_04315 0.44 +1.0
755,618 + +0.3
756,007 + HEPCGN_04320 0.35 -0.3
756,008 - HEPCGN_04320 0.35 -2.2
756,209 + HEPCGN_04320 0.60 -0.2
756,209 + HEPCGN_04320 0.60 +0.5
756,210 - HEPCGN_04320 0.60 -0.1
756,210 - HEPCGN_04320 0.60 -0.6
756,210 - HEPCGN_04320 0.60 -1.7
756,210 - HEPCGN_04320 0.60 -0.8
756,210 - HEPCGN_04320 0.60 -1.0
756,210 - HEPCGN_04320 0.60 -1.3
756,278 - HEPCGN_04320 0.69 -1.5
756,278 - HEPCGN_04320 0.69 -1.5
756,419 + HEPCGN_04320 0.86 +0.3
756,420 - HEPCGN_04320 0.86 -1.7
756,522 + +1.1
756,522 + +0.8
756,575 + -0.1
756,576 - -4.2
756,675 - -2.2
756,750 + HEPCGN_04325 0.17 -0.0
756,839 - HEPCGN_04325 0.25 -0.9
757,001 + HEPCGN_04325 0.41 -0.5
757,001 + HEPCGN_04325 0.41 +0.3
757,002 - HEPCGN_04325 0.41 -2.2
757,218 + HEPCGN_04325 0.61 -1.8
757,258 - HEPCGN_04325 0.65 -0.3
757,258 - HEPCGN_04325 0.65 -0.0
757,279 - HEPCGN_04325 0.67 -1.8
757,290 - HEPCGN_04325 0.68 +1.7
757,290 - HEPCGN_04325 0.68 +0.3
757,290 - HEPCGN_04325 0.68 +0.2
757,367 + HEPCGN_04325 0.75 -0.6
757,374 + HEPCGN_04325 0.76 +0.9
757,449 + HEPCGN_04325 0.83 +0.5
757,521 + +0.3

Or see this region's nucleotide sequence