Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtQ and yohF are separated by 52 nucleotides yohF and yohD are separated by 118 nucleotides yohD and yohC are separated by 169 nucleotides
HEPCGN_02200: mdtQ - multidrug resistance outer membrane protein MdtQ, at 364,192 to 365,382
mdtQ
HEPCGN_02205: yohF - SDR family oxidoreductase, at 365,435 to 366,196
yohF
HEPCGN_02210: yohD - Inner membrane protein YohD, at 366,315 to 366,893
yohD
HEPCGN_02215: yohC - Inner membrane protein YohC, at 367,063 to 367,650
yohC
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 364.450 kb on - strand, within mdtQ at 364.455 kb on + strand, within mdtQ at 364.610 kb on + strand, within mdtQ at 364.611 kb on - strand, within mdtQ at 364.611 kb on - strand, within mdtQ at 364.613 kb on - strand, within mdtQ at 364.613 kb on - strand, within mdtQ at 364.660 kb on - strand, within mdtQ at 364.660 kb on - strand, within mdtQ at 364.737 kb on + strand, within mdtQ at 364.738 kb on - strand, within mdtQ at 364.864 kb on + strand, within mdtQ at 364.881 kb on - strand, within mdtQ at 364.888 kb on - strand, within mdtQ at 364.961 kb on + strand, within mdtQ at 365.120 kb on + strand, within mdtQ at 365.120 kb on + strand, within mdtQ at 365.313 kb on - strand at 365.386 kb on + strand at 365.387 kb on - strand at 365.388 kb on + strand at 365.388 kb on + strand at 365.389 kb on - strand at 365.399 kb on + strand at 365.399 kb on + strand at 365.399 kb on + strand at 365.399 kb on + strand at 365.404 kb on - strand at 365.420 kb on + strand at 365.421 kb on - strand at 365.421 kb on - strand at 365.497 kb on - strand at 365.527 kb on + strand, within yohF at 365.561 kb on - strand, within yohF at 365.589 kb on + strand, within yohF at 365.589 kb on + strand, within yohF at 365.692 kb on + strand, within yohF at 365.848 kb on + strand, within yohF at 365.849 kb on - strand, within yohF at 365.866 kb on + strand, within yohF at 366.100 kb on - strand, within yohF at 366.126 kb on - strand at 366.164 kb on - strand at 366.238 kb on - strand at 366.238 kb on - strand at 366.298 kb on + strand at 366.299 kb on - strand at 366.299 kb on - strand at 366.513 kb on - strand, within yohD at 366.586 kb on + strand, within yohD at 366.590 kb on + strand, within yohD at 366.591 kb on - strand, within yohD at 366.591 kb on - strand, within yohD at 366.599 kb on + strand, within yohD at 366.616 kb on + strand, within yohD at 366.715 kb on + strand, within yohD at 366.760 kb on - strand, within yohD at 366.778 kb on - strand, within yohD at 366.865 kb on + strand at 366.865 kb on + strand at 366.894 kb on - strand at 366.894 kb on - strand at 366.923 kb on + strand at 366.930 kb on - strand at 366.930 kb on - strand at 367.018 kb on + strand at 367.018 kb on + strand at 367.018 kb on + strand at 367.019 kb on - strand at 367.021 kb on - strand at 367.021 kb on - strand at 367.147 kb on + strand, within yohC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 364,450 - mdtQ HEPCGN_02200 0.22 -0.1 364,455 + mdtQ HEPCGN_02200 0.22 +0.1 364,610 + mdtQ HEPCGN_02200 0.35 -0.4 364,611 - mdtQ HEPCGN_02200 0.35 +0.5 364,611 - mdtQ HEPCGN_02200 0.35 -0.1 364,613 - mdtQ HEPCGN_02200 0.35 +0.3 364,613 - mdtQ HEPCGN_02200 0.35 +0.9 364,660 - mdtQ HEPCGN_02200 0.39 -0.0 364,660 - mdtQ HEPCGN_02200 0.39 -0.1 364,737 + mdtQ HEPCGN_02200 0.46 -0.9 364,738 - mdtQ HEPCGN_02200 0.46 +0.7 364,864 + mdtQ HEPCGN_02200 0.56 +0.3 364,881 - mdtQ HEPCGN_02200 0.58 -0.2 364,888 - mdtQ HEPCGN_02200 0.58 +0.2 364,961 + mdtQ HEPCGN_02200 0.65 -0.3 365,120 + mdtQ HEPCGN_02200 0.78 +0.1 365,120 + mdtQ HEPCGN_02200 0.78 +0.2 365,313 - -0.1 365,386 + +0.3 365,387 - -0.6 365,388 + +0.7 365,388 + +0.4 365,389 - +0.3 365,399 + -1.4 365,399 + +0.0 365,399 + +1.4 365,399 + -0.3 365,404 - -0.0 365,420 + +0.2 365,421 - -0.0 365,421 - +0.2 365,497 - -0.6 365,527 + yohF HEPCGN_02205 0.12 -1.2 365,561 - yohF HEPCGN_02205 0.17 -1.9 365,589 + yohF HEPCGN_02205 0.20 -0.3 365,589 + yohF HEPCGN_02205 0.20 -2.4 365,692 + yohF HEPCGN_02205 0.34 -3.4 365,848 + yohF HEPCGN_02205 0.54 -0.9 365,849 - yohF HEPCGN_02205 0.54 -0.0 365,866 + yohF HEPCGN_02205 0.57 -0.9 366,100 - yohF HEPCGN_02205 0.87 +0.1 366,126 - -0.3 366,164 - +0.1 366,238 - +0.4 366,238 - +0.7 366,298 + -1.4 366,299 - +0.4 366,299 - -0.8 366,513 - yohD HEPCGN_02210 0.34 -0.1 366,586 + yohD HEPCGN_02210 0.47 -0.9 366,590 + yohD HEPCGN_02210 0.47 +0.9 366,591 - yohD HEPCGN_02210 0.48 -1.4 366,591 - yohD HEPCGN_02210 0.48 +0.6 366,599 + yohD HEPCGN_02210 0.49 +0.4 366,616 + yohD HEPCGN_02210 0.52 -0.7 366,715 + yohD HEPCGN_02210 0.69 +0.0 366,760 - yohD HEPCGN_02210 0.77 +1.0 366,778 - yohD HEPCGN_02210 0.80 -3.2 366,865 + -1.0 366,865 + -0.3 366,894 - +0.1 366,894 - -0.3 366,923 + -0.6 366,930 - +0.2 366,930 - +0.3 367,018 + +0.1 367,018 + -0.3 367,018 + +0.3 367,019 - +0.7 367,021 - +0.4 367,021 - +0.4 367,147 + yohC HEPCGN_02215 0.14 -0.3
Or see this region's nucleotide sequence