Experiment: Bas39
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modE and acrZ are separated by 128 nucleotides acrZ and modA are separated by 166 nucleotides modA and modB overlap by 1 nucleotides modB and modC are separated by 2 nucleotides
HEPCGN_01570: modE - molybdenum-dependent transcriptional regulator, at 238,085 to 238,873
modE
HEPCGN_01575: acrZ - multidrug efflux pump accessory protein AcrZ, at 239,002 to 239,151
acrZ
HEPCGN_01580: modA - molybdate ABC transporter substrate-binding protein, at 239,318 to 240,091
modA
HEPCGN_01585: modB - molybdate ABC transporter permease subunit, at 240,091 to 240,780
modB
HEPCGN_01590: modC - molybdenum ABC transporter ATP-binding protein ModC, at 240,783 to 241,841
modC
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1 at 238.331 kb on + strand, within modE at 238.332 kb on - strand, within modE at 238.609 kb on - strand, within modE at 238.664 kb on - strand, within modE at 238.690 kb on + strand, within modE at 238.700 kb on + strand, within modE at 238.741 kb on - strand, within modE at 238.800 kb on - strand at 238.800 kb on - strand at 238.846 kb on + strand at 238.873 kb on + strand at 238.974 kb on - strand at 238.986 kb on - strand at 238.986 kb on - strand at 238.987 kb on + strand at 238.988 kb on - strand at 239.006 kb on + strand at 239.006 kb on + strand at 239.007 kb on - strand at 239.096 kb on + strand, within acrZ at 239.228 kb on + strand at 239.228 kb on + strand at 239.243 kb on - strand at 239.248 kb on + strand at 239.295 kb on - strand at 239.326 kb on + strand at 239.460 kb on - strand, within modA at 239.510 kb on - strand, within modA at 239.638 kb on + strand, within modA at 239.772 kb on - strand, within modA at 240.001 kb on + strand, within modA at 240.032 kb on + strand at 240.080 kb on - strand at 240.089 kb on + strand at 240.089 kb on + strand at 240.089 kb on + strand at 240.090 kb on - strand at 240.125 kb on + strand at 240.195 kb on - strand, within modB at 240.200 kb on + strand, within modB at 240.200 kb on + strand, within modB at 240.201 kb on - strand, within modB at 240.240 kb on - strand, within modB at 240.248 kb on + strand, within modB at 240.249 kb on - strand, within modB at 240.284 kb on + strand, within modB at 240.284 kb on + strand, within modB at 240.285 kb on - strand, within modB at 240.285 kb on - strand, within modB at 240.360 kb on + strand, within modB at 240.511 kb on - strand, within modB at 240.538 kb on - strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.643 kb on - strand, within modB at 240.646 kb on + strand, within modB at 240.646 kb on + strand, within modB at 240.647 kb on - strand, within modB at 240.647 kb on - strand, within modB at 240.647 kb on - strand, within modB at 240.647 kb on - strand, within modB at 240.648 kb on + strand, within modB at 240.696 kb on + strand, within modB at 240.699 kb on + strand, within modB at 240.699 kb on + strand, within modB at 240.700 kb on - strand, within modB at 240.967 kb on + strand, within modC at 240.967 kb on + strand, within modC at 241.015 kb on + strand, within modC at 241.021 kb on - strand, within modC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas39 remove 238,331 + modE HEPCGN_01570 0.31 +1.0 238,332 - modE HEPCGN_01570 0.31 -0.1 238,609 - modE HEPCGN_01570 0.66 +0.1 238,664 - modE HEPCGN_01570 0.73 +0.0 238,690 + modE HEPCGN_01570 0.77 +0.3 238,700 + modE HEPCGN_01570 0.78 -0.4 238,741 - modE HEPCGN_01570 0.83 -0.5 238,800 - -0.1 238,800 - -0.4 238,846 + +0.8 238,873 + -0.4 238,974 - +0.4 238,986 - -0.2 238,986 - +0.9 238,987 + +1.2 238,988 - -0.4 239,006 + +0.5 239,006 + +0.1 239,007 - -2.3 239,096 + acrZ HEPCGN_01575 0.63 +0.2 239,228 + +0.1 239,228 + +0.1 239,243 - -0.4 239,248 + +0.2 239,295 - -0.4 239,326 + -0.1 239,460 - modA HEPCGN_01580 0.18 -0.2 239,510 - modA HEPCGN_01580 0.25 -0.9 239,638 + modA HEPCGN_01580 0.41 -1.5 239,772 - modA HEPCGN_01580 0.59 +0.3 240,001 + modA HEPCGN_01580 0.88 -0.6 240,032 + -0.1 240,080 - +0.9 240,089 + -0.3 240,089 + -0.1 240,089 + -0.6 240,090 - +0.6 240,125 + +0.1 240,195 - modB HEPCGN_01585 0.15 +0.6 240,200 + modB HEPCGN_01585 0.16 -0.2 240,200 + modB HEPCGN_01585 0.16 +1.0 240,201 - modB HEPCGN_01585 0.16 +1.1 240,240 - modB HEPCGN_01585 0.22 +0.5 240,248 + modB HEPCGN_01585 0.23 -0.4 240,249 - modB HEPCGN_01585 0.23 -1.7 240,284 + modB HEPCGN_01585 0.28 +0.1 240,284 + modB HEPCGN_01585 0.28 -0.0 240,285 - modB HEPCGN_01585 0.28 +0.5 240,285 - modB HEPCGN_01585 0.28 +0.1 240,360 + modB HEPCGN_01585 0.39 -0.6 240,511 - modB HEPCGN_01585 0.61 +0.1 240,538 - modB HEPCGN_01585 0.65 +0.3 240,642 + modB HEPCGN_01585 0.80 -0.5 240,642 + modB HEPCGN_01585 0.80 -1.2 240,642 + modB HEPCGN_01585 0.80 +1.2 240,642 + modB HEPCGN_01585 0.80 +0.2 240,642 + modB HEPCGN_01585 0.80 -1.3 240,642 + modB HEPCGN_01585 0.80 +0.6 240,642 + modB HEPCGN_01585 0.80 -0.5 240,643 - modB HEPCGN_01585 0.80 -0.0 240,646 + modB HEPCGN_01585 0.80 -0.0 240,646 + modB HEPCGN_01585 0.80 -1.1 240,647 - modB HEPCGN_01585 0.81 -0.0 240,647 - modB HEPCGN_01585 0.81 -1.7 240,647 - modB HEPCGN_01585 0.81 -0.1 240,647 - modB HEPCGN_01585 0.81 -0.5 240,648 + modB HEPCGN_01585 0.81 -0.6 240,696 + modB HEPCGN_01585 0.88 +0.4 240,699 + modB HEPCGN_01585 0.88 +0.2 240,699 + modB HEPCGN_01585 0.88 -0.2 240,700 - modB HEPCGN_01585 0.88 -0.3 240,967 + modC HEPCGN_01590 0.17 +0.2 240,967 + modC HEPCGN_01590 0.17 -2.3 241,015 + modC HEPCGN_01590 0.22 +0.6 241,021 - modC HEPCGN_01590 0.22 -0.5
Or see this region's nucleotide sequence