Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00170

Experiment: Bas39

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00165 and HEPCGN_00170 are separated by 104 nucleotidesHEPCGN_00170 and HEPCGN_00175 are separated by 93 nucleotidesHEPCGN_00175 and HEPCGN_00180 are separated by 35 nucleotidesHEPCGN_00180 and HEPCGN_00185 are separated by 61 nucleotides HEPCGN_00165: HEPCGN_00165 - resolvase, at 6,182 to 7,078 _00165 HEPCGN_00170: HEPCGN_00170 - peptidyl-arginine deiminase, at 7,183 to 7,842 _00170 HEPCGN_00175: HEPCGN_00175 - hypothetical protein, at 7,936 to 8,238 _00175 HEPCGN_00180: HEPCGN_00180 - hypothetical protein, at 8,274 to 8,525 _00180 HEPCGN_00185: HEPCGN_00185 - Putative integral membrane protein, at 8,587 to 8,802 _00185 Position (kb) 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6.210 kb on + strandat 6.211 kb on - strandat 6.380 kb on + strand, within HEPCGN_00165at 6.387 kb on + strand, within HEPCGN_00165at 6.388 kb on - strand, within HEPCGN_00165at 6.440 kb on - strand, within HEPCGN_00165at 6.440 kb on - strand, within HEPCGN_00165at 6.440 kb on - strand, within HEPCGN_00165at 6.443 kb on + strand, within HEPCGN_00165at 6.511 kb on + strand, within HEPCGN_00165at 6.512 kb on - strand, within HEPCGN_00165at 6.627 kb on + strand, within HEPCGN_00165at 6.628 kb on - strand, within HEPCGN_00165at 6.628 kb on - strand, within HEPCGN_00165at 6.628 kb on - strand, within HEPCGN_00165at 6.628 kb on - strand, within HEPCGN_00165at 6.628 kb on - strand, within HEPCGN_00165at 6.628 kb on - strand, within HEPCGN_00165at 6.670 kb on - strand, within HEPCGN_00165at 6.710 kb on - strand, within HEPCGN_00165at 6.710 kb on - strand, within HEPCGN_00165at 6.768 kb on + strand, within HEPCGN_00165at 6.768 kb on + strand, within HEPCGN_00165at 6.769 kb on - strand, within HEPCGN_00165at 6.769 kb on - strand, within HEPCGN_00165at 6.878 kb on + strand, within HEPCGN_00165at 6.878 kb on + strand, within HEPCGN_00165at 6.879 kb on - strand, within HEPCGN_00165at 6.966 kb on - strand, within HEPCGN_00165at 7.052 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.114 kb on - strandat 7.116 kb on + strandat 7.116 kb on + strandat 7.117 kb on - strandat 7.117 kb on - strandat 7.122 kb on + strandat 7.197 kb on + strandat 7.198 kb on - strandat 7.198 kb on - strandat 7.213 kb on - strandat 7.223 kb on + strandat 7.224 kb on - strandat 7.250 kb on + strand, within HEPCGN_00170at 7.250 kb on + strand, within HEPCGN_00170at 7.250 kb on + strand, within HEPCGN_00170at 7.250 kb on + strand, within HEPCGN_00170at 7.251 kb on - strand, within HEPCGN_00170at 7.251 kb on - strand, within HEPCGN_00170at 7.251 kb on - strand, within HEPCGN_00170at 7.251 kb on - strand, within HEPCGN_00170at 7.338 kb on + strand, within HEPCGN_00170at 7.365 kb on - strand, within HEPCGN_00170at 7.381 kb on + strand, within HEPCGN_00170at 7.444 kb on - strand, within HEPCGN_00170at 7.566 kb on + strand, within HEPCGN_00170at 7.566 kb on + strand, within HEPCGN_00170at 7.621 kb on - strand, within HEPCGN_00170at 7.621 kb on - strand, within HEPCGN_00170at 7.621 kb on - strand, within HEPCGN_00170at 7.633 kb on - strand, within HEPCGN_00170at 7.713 kb on + strand, within HEPCGN_00170at 7.714 kb on - strand, within HEPCGN_00170at 7.717 kb on + strand, within HEPCGN_00170at 7.717 kb on + strand, within HEPCGN_00170at 7.718 kb on - strand, within HEPCGN_00170at 7.718 kb on - strand, within HEPCGN_00170at 7.718 kb on - strand, within HEPCGN_00170at 7.718 kb on - strand, within HEPCGN_00170at 7.718 kb on - strand, within HEPCGN_00170at 7.719 kb on + strand, within HEPCGN_00170at 7.726 kb on - strand, within HEPCGN_00170at 7.745 kb on - strand, within HEPCGN_00170at 7.746 kb on + strand, within HEPCGN_00170at 7.747 kb on - strand, within HEPCGN_00170at 7.755 kb on + strand, within HEPCGN_00170at 7.771 kb on + strand, within HEPCGN_00170at 7.772 kb on - strand, within HEPCGN_00170at 7.780 kb on - strandat 7.847 kb on + strandat 7.872 kb on + strandat 7.873 kb on - strandat 7.875 kb on - strandat 8.101 kb on + strand, within HEPCGN_00175at 8.190 kb on + strand, within HEPCGN_00175at 8.191 kb on - strand, within HEPCGN_00175at 8.268 kb on - strandat 8.273 kb on + strandat 8.273 kb on + strandat 8.280 kb on - strandat 8.280 kb on - strandat 8.363 kb on - strand, within HEPCGN_00180at 8.384 kb on + strand, within HEPCGN_00180at 8.396 kb on - strand, within HEPCGN_00180at 8.413 kb on - strand, within HEPCGN_00180at 8.413 kb on - strand, within HEPCGN_00180at 8.448 kb on + strand, within HEPCGN_00180at 8.450 kb on + strand, within HEPCGN_00180at 8.450 kb on + strand, within HEPCGN_00180at 8.451 kb on - strand, within HEPCGN_00180at 8.452 kb on + strand, within HEPCGN_00180at 8.453 kb on - strand, within HEPCGN_00180at 8.453 kb on - strand, within HEPCGN_00180at 8.489 kb on + strand, within HEPCGN_00180at 8.489 kb on + strand, within HEPCGN_00180at 8.498 kb on + strand, within HEPCGN_00180at 8.500 kb on + strandat 8.536 kb on + strandat 8.547 kb on + strandat 8.547 kb on + strandat 8.547 kb on + strandat 8.712 kb on + strand, within HEPCGN_00185at 8.713 kb on - strand, within HEPCGN_00185at 8.717 kb on + strand, within HEPCGN_00185at 8.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas39
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6,210 + -0.3
6,211 - -0.3
6,380 + HEPCGN_00165 0.22 -0.3
6,387 + HEPCGN_00165 0.23 +0.2
6,388 - HEPCGN_00165 0.23 +0.6
6,440 - HEPCGN_00165 0.29 +0.4
6,440 - HEPCGN_00165 0.29 +0.4
6,440 - HEPCGN_00165 0.29 -0.1
6,443 + HEPCGN_00165 0.29 -0.2
6,511 + HEPCGN_00165 0.37 +0.1
6,512 - HEPCGN_00165 0.37 -0.1
6,627 + HEPCGN_00165 0.50 +0.6
6,628 - HEPCGN_00165 0.50 -0.7
6,628 - HEPCGN_00165 0.50 +0.9
6,628 - HEPCGN_00165 0.50 -0.3
6,628 - HEPCGN_00165 0.50 -0.1
6,628 - HEPCGN_00165 0.50 -0.0
6,628 - HEPCGN_00165 0.50 -1.5
6,670 - HEPCGN_00165 0.54 +0.5
6,710 - HEPCGN_00165 0.59 +0.4
6,710 - HEPCGN_00165 0.59 +0.4
6,768 + HEPCGN_00165 0.65 +0.3
6,768 + HEPCGN_00165 0.65 +0.9
6,769 - HEPCGN_00165 0.65 +0.6
6,769 - HEPCGN_00165 0.65 -0.2
6,878 + HEPCGN_00165 0.78 +0.1
6,878 + HEPCGN_00165 0.78 +0.5
6,879 - HEPCGN_00165 0.78 -0.9
6,966 - HEPCGN_00165 0.87 -1.1
7,052 + +0.2
7,113 + +0.5
7,113 + -0.0
7,114 - +0.1
7,116 + -0.1
7,116 + +0.3
7,117 - -0.3
7,117 - -0.3
7,122 + +0.2
7,197 + -0.5
7,198 - +0.4
7,198 - -0.8
7,213 - -0.5
7,223 + -1.4
7,224 - -0.1
7,250 + HEPCGN_00170 0.10 -0.1
7,250 + HEPCGN_00170 0.10 -0.8
7,250 + HEPCGN_00170 0.10 -2.1
7,250 + HEPCGN_00170 0.10 -0.1
7,251 - HEPCGN_00170 0.10 -0.7
7,251 - HEPCGN_00170 0.10 -0.9
7,251 - HEPCGN_00170 0.10 +0.3
7,251 - HEPCGN_00170 0.10 -0.4
7,338 + HEPCGN_00170 0.23 -1.8
7,365 - HEPCGN_00170 0.28 -0.5
7,381 + HEPCGN_00170 0.30 -0.4
7,444 - HEPCGN_00170 0.40 -0.2
7,566 + HEPCGN_00170 0.58 -0.2
7,566 + HEPCGN_00170 0.58 -1.6
7,621 - HEPCGN_00170 0.66 +1.6
7,621 - HEPCGN_00170 0.66 -2.3
7,621 - HEPCGN_00170 0.66 -0.4
7,633 - HEPCGN_00170 0.68 +0.2
7,713 + HEPCGN_00170 0.80 -0.3
7,714 - HEPCGN_00170 0.80 -2.3
7,717 + HEPCGN_00170 0.81 +0.6
7,717 + HEPCGN_00170 0.81 -0.3
7,718 - HEPCGN_00170 0.81 -0.2
7,718 - HEPCGN_00170 0.81 -2.5
7,718 - HEPCGN_00170 0.81 -0.6
7,718 - HEPCGN_00170 0.81 -4.0
7,718 - HEPCGN_00170 0.81 -0.1
7,719 + HEPCGN_00170 0.81 -1.2
7,726 - HEPCGN_00170 0.82 +0.6
7,745 - HEPCGN_00170 0.85 -0.9
7,746 + HEPCGN_00170 0.85 -0.1
7,747 - HEPCGN_00170 0.85 +0.3
7,755 + HEPCGN_00170 0.87 -1.4
7,771 + HEPCGN_00170 0.89 -1.5
7,772 - HEPCGN_00170 0.89 +0.2
7,780 - -1.8
7,847 + +0.1
7,872 + +0.8
7,873 - -0.1
7,875 - +0.2
8,101 + HEPCGN_00175 0.54 -0.3
8,190 + HEPCGN_00175 0.84 -1.0
8,191 - HEPCGN_00175 0.84 +0.0
8,268 - +0.6
8,273 + +0.7
8,273 + -0.0
8,280 - +0.2
8,280 - +0.1
8,363 - HEPCGN_00180 0.35 +0.4
8,384 + HEPCGN_00180 0.44 +0.0
8,396 - HEPCGN_00180 0.48 +0.1
8,413 - HEPCGN_00180 0.55 -0.6
8,413 - HEPCGN_00180 0.55 +0.4
8,448 + HEPCGN_00180 0.69 -1.6
8,450 + HEPCGN_00180 0.70 +0.4
8,450 + HEPCGN_00180 0.70 +0.3
8,451 - HEPCGN_00180 0.70 +0.1
8,452 + HEPCGN_00180 0.71 +0.6
8,453 - HEPCGN_00180 0.71 +0.6
8,453 - HEPCGN_00180 0.71 -0.3
8,489 + HEPCGN_00180 0.85 +0.1
8,489 + HEPCGN_00180 0.85 +0.8
8,498 + HEPCGN_00180 0.89 +0.4
8,500 + -1.0
8,536 + -0.0
8,547 + -0.5
8,547 + -0.4
8,547 + +0.1
8,712 + HEPCGN_00185 0.58 -0.4
8,713 - HEPCGN_00185 0.58 +0.1
8,717 + HEPCGN_00185 0.60 -0.1
8,794 - -0.0

Or see this region's nucleotide sequence