Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16485

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS17070 and A4249_RS16485 overlap by 4 nucleotidesA4249_RS16485 and A4249_RS02710 overlap by 4 nucleotidesA4249_RS02710 and A4249_RS02715 overlap by 4 nucleotidesA4249_RS02715 and A4249_RS02720 overlap by 4 nucleotides A4249_RS17070: A4249_RS17070 - DUF2793 domain-containing protein, at 576,341 to 577,777 _RS17070 A4249_RS16485: A4249_RS16485 - hypothetical protein, at 577,774 to 577,929 _RS16485 A4249_RS02710: A4249_RS02710 - hypothetical protein, at 577,926 to 578,195 _RS02710 A4249_RS02715: A4249_RS02715 - M15 family metallopeptidase, at 578,192 to 578,575 _RS02715 A4249_RS02720: A4249_RS02720 - hypothetical protein, at 578,572 to 579,051 _RS02720 Position (kb) 577 578Strain fitness (log2 ratio) -2 -1 0 1at 576.888 kb on - strand, within A4249_RS17070at 577.061 kb on + strand, within A4249_RS17070at 577.061 kb on + strand, within A4249_RS17070at 577.062 kb on - strand, within A4249_RS17070at 577.062 kb on - strand, within A4249_RS17070at 577.502 kb on + strand, within A4249_RS17070at 577.502 kb on + strand, within A4249_RS17070at 577.502 kb on + strand, within A4249_RS17070at 577.502 kb on + strand, within A4249_RS17070at 577.544 kb on + strand, within A4249_RS17070at 577.545 kb on - strand, within A4249_RS17070at 577.545 kb on - strand, within A4249_RS17070at 577.906 kb on + strand, within A4249_RS16485at 577.906 kb on + strand, within A4249_RS16485at 577.907 kb on - strand, within A4249_RS16485at 577.990 kb on - strand, within A4249_RS02710at 577.990 kb on - strand, within A4249_RS02710at 578.115 kb on + strand, within A4249_RS02710at 578.115 kb on + strand, within A4249_RS02710at 578.115 kb on + strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.589 kb on - strandat 578.589 kb on - strandat 578.589 kb on - strandat 578.589 kb on - strandat 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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576,888 - A4249_RS17070 0.38 -2.5
577,061 + A4249_RS17070 0.50 -1.9
577,061 + A4249_RS17070 0.50 -0.1
577,062 - A4249_RS17070 0.50 +0.8
577,062 - A4249_RS17070 0.50 -0.9
577,502 + A4249_RS17070 0.81 -0.4
577,502 + A4249_RS17070 0.81 +0.2
577,502 + A4249_RS17070 0.81 -0.5
577,502 + A4249_RS17070 0.81 +1.2
577,544 + A4249_RS17070 0.84 -0.1
577,545 - A4249_RS17070 0.84 -1.3
577,545 - A4249_RS17070 0.84 +0.3
577,906 + A4249_RS16485 0.85 +1.1
577,906 + A4249_RS16485 0.85 -1.7
577,907 - A4249_RS16485 0.85 -0.4
577,990 - A4249_RS02710 0.24 -0.0
577,990 - A4249_RS02710 0.24 +0.4
578,115 + A4249_RS02710 0.70 -0.2
578,115 + A4249_RS02710 0.70 +0.2
578,115 + A4249_RS02710 0.70 -0.8
578,116 - A4249_RS02710 0.70 +0.3
578,116 - A4249_RS02710 0.70 +0.0
578,116 - A4249_RS02710 0.70 -0.3
578,116 - A4249_RS02710 0.70 +1.3
578,447 + A4249_RS02715 0.66 +0.1
578,447 + A4249_RS02715 0.66 +1.0
578,447 + A4249_RS02715 0.66 -0.0
578,447 + A4249_RS02715 0.66 +0.6
578,447 + A4249_RS02715 0.66 +0.9
578,447 + A4249_RS02715 0.66 +0.8
578,448 - A4249_RS02715 0.67 +0.3
578,448 - A4249_RS02715 0.67 -1.4
578,448 - A4249_RS02715 0.67 +0.3
578,448 - A4249_RS02715 0.67 -0.7
578,448 - A4249_RS02715 0.67 -0.7
578,448 - A4249_RS02715 0.67 -0.4
578,448 - A4249_RS02715 0.67 -0.2
578,448 - A4249_RS02715 0.67 +0.7
578,588 + +0.3
578,588 + -1.7
578,588 + +1.6
578,588 + -0.3
578,588 + -0.3
578,588 + +1.3
578,589 - -0.4
578,589 - +0.0
578,589 - -0.2
578,589 - -1.5
578,824 + A4249_RS02720 0.53 +0.4
578,824 + A4249_RS02720 0.53 +0.8
578,824 + A4249_RS02720 0.53 +0.2
578,824 + A4249_RS02720 0.53 -0.0
578,824 + A4249_RS02720 0.53 -0.5
578,824 + A4249_RS02720 0.53 -0.8
578,824 + A4249_RS02720 0.53 -0.3
578,825 - A4249_RS02720 0.53 -0.2
578,825 - A4249_RS02720 0.53 -1.0
578,825 - A4249_RS02720 0.53 -0.4
578,825 - A4249_RS02720 0.53 +1.0
578,825 - A4249_RS02720 0.53 -0.8
578,825 - A4249_RS02720 0.53 -0.5

Or see this region's nucleotide sequence