Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15975

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15965 and A4249_RS15970 are separated by 20 nucleotidesA4249_RS15970 and A4249_RS15975 are separated by 64 nucleotidesA4249_RS15975 and A4249_RS15980 are separated by 42 nucleotidesA4249_RS15980 and A4249_RS15985 overlap by 4 nucleotides A4249_RS15965: A4249_RS15965 - YdeI/OmpD-associated family protein, at 3,221,317 to 3,221,913 _RS15965 A4249_RS15970: A4249_RS15970 - dihydropteroate synthase, at 3,221,934 to 3,222,734 _RS15970 A4249_RS15975: A4249_RS15975 - DMT family protein, at 3,222,799 to 3,223,155 _RS15975 A4249_RS15980: A4249_RS15980 - multidrug efflux SMR transporter, at 3,223,198 to 3,223,542 _RS15980 A4249_RS15985: A4249_RS15985 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,223,539 to 3,224,339 _RS15985 Position (kb) 3222 3223 3224Strain fitness (log2 ratio) -2 -1 0 1at 3221.806 kb on + strand, within A4249_RS15965at 3222.707 kb on + strandat 3222.707 kb on + strandat 3222.707 kb on + strandat 3222.707 kb on + strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.708 kb on - strandat 3222.764 kb on + strandat 3222.764 kb on + strandat 3222.764 kb on + strandat 3222.764 kb on + strandat 3222.765 kb on - strandat 3222.765 kb on - strandat 3222.765 kb on - strandat 3222.814 kb on + strandat 3222.814 kb on + strandat 3222.815 kb on - strandat 3222.871 kb on + strand, within A4249_RS15975at 3222.872 kb on - strand, within A4249_RS15975at 3222.872 kb on - strand, within A4249_RS15975at 3222.988 kb on + strand, within A4249_RS15975at 3222.988 kb on + strand, within A4249_RS15975at 3223.060 kb on + strand, within A4249_RS15975at 3223.060 kb on + strand, within A4249_RS15975at 3223.061 kb on - strand, within A4249_RS15975at 3223.061 kb on - strand, within A4249_RS15975at 3223.061 kb on - strand, within A4249_RS15975at 3223.061 kb on - strand, within A4249_RS15975at 3223.061 kb on - strand, within A4249_RS15975at 3223.061 kb on - strand, within A4249_RS15975at 3223.390 kb on + strand, within A4249_RS15980at 3223.390 kb on + strand, within A4249_RS15980at 3223.390 kb on + strand, within A4249_RS15980at 3223.390 kb on + strand, within A4249_RS15980at 3223.391 kb on - strand, within A4249_RS15980at 3223.391 kb on - strand, within A4249_RS15980at 3223.391 kb on - strand, within A4249_RS15980at 3223.391 kb on - strand, within A4249_RS15980at 3223.391 kb on - strand, within A4249_RS15980at 3223.448 kb on - strand, within A4249_RS15980

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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3,221,806 + A4249_RS15965 0.82 -0.4
3,222,707 + -0.9
3,222,707 + -0.3
3,222,707 + +0.3
3,222,707 + +0.2
3,222,708 - +1.2
3,222,708 - +0.6
3,222,708 - -1.4
3,222,708 - -0.9
3,222,708 - +1.1
3,222,764 + +1.2
3,222,764 + -0.4
3,222,764 + -0.3
3,222,764 + +0.8
3,222,765 - -2.4
3,222,765 - -0.3
3,222,765 - +0.7
3,222,814 + -0.4
3,222,814 + -0.0
3,222,815 - +1.1
3,222,871 + A4249_RS15975 0.20 +0.2
3,222,872 - A4249_RS15975 0.20 -0.4
3,222,872 - A4249_RS15975 0.20 +0.4
3,222,988 + A4249_RS15975 0.53 +0.9
3,222,988 + A4249_RS15975 0.53 -1.0
3,223,060 + A4249_RS15975 0.73 +0.3
3,223,060 + A4249_RS15975 0.73 +0.1
3,223,061 - A4249_RS15975 0.73 -0.9
3,223,061 - A4249_RS15975 0.73 +0.1
3,223,061 - A4249_RS15975 0.73 +0.3
3,223,061 - A4249_RS15975 0.73 +1.1
3,223,061 - A4249_RS15975 0.73 -0.6
3,223,061 - A4249_RS15975 0.73 +0.3
3,223,390 + A4249_RS15980 0.56 +1.7
3,223,390 + A4249_RS15980 0.56 -0.2
3,223,390 + A4249_RS15980 0.56 -0.8
3,223,390 + A4249_RS15980 0.56 -0.3
3,223,391 - A4249_RS15980 0.56 -0.3
3,223,391 - A4249_RS15980 0.56 -0.3
3,223,391 - A4249_RS15980 0.56 -1.3
3,223,391 - A4249_RS15980 0.56 -0.7
3,223,391 - A4249_RS15980 0.56 +0.1
3,223,448 - A4249_RS15980 0.72 +0.0

Or see this region's nucleotide sequence