Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15865

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15855 and A4249_RS15860 overlap by 4 nucleotidesA4249_RS15860 and A4249_RS15865 are separated by 13 nucleotidesA4249_RS15865 and A4249_RS15870 are separated by 57 nucleotides A4249_RS15855: A4249_RS15855 - crossover junction endodeoxyribonuclease RuvC, at 3,202,493 to 3,203,011 _RS15855 A4249_RS15860: A4249_RS15860 - Holliday junction branch migration protein RuvA, at 3,203,008 to 3,203,625 _RS15860 A4249_RS15865: A4249_RS15865 - Holliday junction branch migration DNA helicase RuvB, at 3,203,639 to 3,204,670 _RS15865 A4249_RS15870: A4249_RS15870 - alpha/beta fold hydrolase, at 3,204,728 to 3,206,194 _RS15870 Position (kb) 3203 3204 3205Strain fitness (log2 ratio) -2 -1 0 1 2at 3203.084 kb on - strand, within A4249_RS15860at 3204.130 kb on + strand, within A4249_RS15865at 3204.177 kb on - strand, within A4249_RS15865at 3204.177 kb on - strand, within A4249_RS15865at 3204.452 kb on + strand, within A4249_RS15865at 3204.452 kb on + strand, within A4249_RS15865at 3204.453 kb on - strand, within A4249_RS15865at 3204.600 kb on - strandat 3204.600 kb on - strandat 3204.668 kb on + strandat 3204.668 kb on + strandat 3204.669 kb on - strandat 3204.669 kb on - strandat 3204.937 kb on + strand, within A4249_RS15870at 3204.937 kb on + strand, within A4249_RS15870at 3204.937 kb on + strand, within A4249_RS15870at 3204.938 kb on - strand, within A4249_RS15870at 3204.959 kb on + strand, within A4249_RS15870at 3204.959 kb on + strand, within A4249_RS15870at 3204.959 kb on + strand, within A4249_RS15870at 3204.960 kb on - strand, within A4249_RS15870at 3205.226 kb on + strand, within A4249_RS15870at 3205.226 kb on + strand, within A4249_RS15870at 3205.256 kb on + strand, within A4249_RS15870at 3205.256 kb on + strand, within A4249_RS15870at 3205.340 kb on + strand, within A4249_RS15870at 3205.341 kb on - strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.643 kb on + strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.644 kb on - strand, within A4249_RS15870at 3205.645 kb on + strand, within A4249_RS15870at 3205.646 kb on - strand, within A4249_RS15870

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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3,203,084 - A4249_RS15860 0.12 -0.5
3,204,130 + A4249_RS15865 0.48 -0.4
3,204,177 - A4249_RS15865 0.52 -0.9
3,204,177 - A4249_RS15865 0.52 -0.2
3,204,452 + A4249_RS15865 0.79 -0.2
3,204,452 + A4249_RS15865 0.79 +1.8
3,204,453 - A4249_RS15865 0.79 +0.1
3,204,600 - +0.5
3,204,600 - +1.4
3,204,668 + +1.8
3,204,668 + -0.3
3,204,669 - -0.7
3,204,669 - +0.2
3,204,937 + A4249_RS15870 0.14 +1.2
3,204,937 + A4249_RS15870 0.14 -2.5
3,204,937 + A4249_RS15870 0.14 +0.3
3,204,938 - A4249_RS15870 0.14 +0.2
3,204,959 + A4249_RS15870 0.16 -1.6
3,204,959 + A4249_RS15870 0.16 +0.1
3,204,959 + A4249_RS15870 0.16 +0.1
3,204,960 - A4249_RS15870 0.16 +0.3
3,205,226 + A4249_RS15870 0.34 +2.1
3,205,226 + A4249_RS15870 0.34 -0.1
3,205,256 + A4249_RS15870 0.36 -0.4
3,205,256 + A4249_RS15870 0.36 +0.1
3,205,340 + A4249_RS15870 0.42 -0.7
3,205,341 - A4249_RS15870 0.42 -0.1
3,205,643 + A4249_RS15870 0.62 +1.3
3,205,643 + A4249_RS15870 0.62 -0.2
3,205,643 + A4249_RS15870 0.62 -1.0
3,205,644 - A4249_RS15870 0.62 +1.1
3,205,644 - A4249_RS15870 0.62 +0.8
3,205,644 - A4249_RS15870 0.62 +0.5
3,205,644 - A4249_RS15870 0.62 +1.1
3,205,644 - A4249_RS15870 0.62 +1.5
3,205,644 - A4249_RS15870 0.62 -0.1
3,205,645 + A4249_RS15870 0.63 +0.1
3,205,646 - A4249_RS15870 0.63 +0.1

Or see this region's nucleotide sequence