Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13345

Experiment: Guanosine 0.35306 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13335 and A4249_RS13340 are separated by 65 nucleotidesA4249_RS13340 and A4249_RS13345 are separated by 145 nucleotidesA4249_RS13345 and A4249_RS13350 are separated by 80 nucleotidesA4249_RS13350 and A4249_RS13355 are separated by 297 nucleotides A4249_RS13335: A4249_RS13335 - DUF2459 domain-containing protein, at 2,693,309 to 2,693,992 _RS13335 A4249_RS13340: A4249_RS13340 - 30S ribosome-binding factor RbfA, at 2,694,058 to 2,694,513 _RS13340 A4249_RS13345: A4249_RS13345 - tRNA pseudouridine(55) synthase TruB, at 2,694,659 to 2,695,588 _RS13345 A4249_RS13350: A4249_RS13350 - 30S ribosomal protein S15, at 2,695,669 to 2,695,938 _RS13350 A4249_RS13355: A4249_RS13355 - polyribonucleotide nucleotidyltransferase, at 2,696,236 to 2,698,470 _RS13355 Position (kb) 2694 2695 2696Strain fitness (log2 ratio) -2 -1 0 1 2at 2693.675 kb on + strand, within A4249_RS13335at 2693.675 kb on + strand, within A4249_RS13335at 2693.675 kb on + strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.676 kb on - strand, within A4249_RS13335at 2693.788 kb on - strand, within A4249_RS13335at 2693.990 kb on + strandat 2693.991 kb on - strandat 2693.991 kb on - strandat 2693.991 kb on - strandat 2694.823 kb on + strand, within A4249_RS13345at 2694.882 kb on - strand, within A4249_RS13345at 2695.064 kb on + strand, within A4249_RS13345at 2695.064 kb on + strand, within A4249_RS13345at 2695.065 kb on - strand, within A4249_RS13345at 2695.065 kb on - strand, within A4249_RS13345at 2695.193 kb on + strand, within A4249_RS13345at 2695.193 kb on + strand, within A4249_RS13345at 2695.193 kb on + strand, within A4249_RS13345at 2695.193 kb on + strand, within A4249_RS13345at 2695.193 kb on + strand, within A4249_RS13345at 2695.194 kb on - strand, within A4249_RS13345at 2695.194 kb on - strand, within A4249_RS13345at 2695.194 kb on - strand, within A4249_RS13345at 2696.006 kb on + strandat 2696.006 kb on + strandat 2696.006 kb on + strandat 2696.006 kb on + strandat 2696.007 kb on - strandat 2696.057 kb on + strandat 2696.057 kb on + strandat 2696.057 kb on + strandat 2696.057 kb on + strandat 2696.207 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
remove
2,693,675 + A4249_RS13335 0.54 +0.3
2,693,675 + A4249_RS13335 0.54 +0.6
2,693,675 + A4249_RS13335 0.54 +0.1
2,693,676 - A4249_RS13335 0.54 +1.2
2,693,676 - A4249_RS13335 0.54 -1.6
2,693,676 - A4249_RS13335 0.54 +0.5
2,693,676 - A4249_RS13335 0.54 -0.6
2,693,676 - A4249_RS13335 0.54 +1.0
2,693,676 - A4249_RS13335 0.54 +0.2
2,693,676 - A4249_RS13335 0.54 +0.2
2,693,788 - A4249_RS13335 0.70 -1.4
2,693,990 + -1.8
2,693,991 - +0.5
2,693,991 - -0.0
2,693,991 - +0.1
2,694,823 + A4249_RS13345 0.18 -0.2
2,694,882 - A4249_RS13345 0.24 +2.0
2,695,064 + A4249_RS13345 0.44 -0.1
2,695,064 + A4249_RS13345 0.44 -2.1
2,695,065 - A4249_RS13345 0.44 -0.7
2,695,065 - A4249_RS13345 0.44 +1.5
2,695,193 + A4249_RS13345 0.57 -0.6
2,695,193 + A4249_RS13345 0.57 -0.6
2,695,193 + A4249_RS13345 0.57 +0.7
2,695,193 + A4249_RS13345 0.57 +0.4
2,695,193 + A4249_RS13345 0.57 -0.5
2,695,194 - A4249_RS13345 0.58 -0.1
2,695,194 - A4249_RS13345 0.58 +1.3
2,695,194 - A4249_RS13345 0.58 -0.3
2,696,006 + -0.2
2,696,006 + -0.8
2,696,006 + +0.9
2,696,006 + -1.2
2,696,007 - +0.1
2,696,057 + +1.7
2,696,057 + +0.2
2,696,057 + +1.1
2,696,057 + -1.6
2,696,207 + -0.5

Or see this region's nucleotide sequence