Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11905

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11900 and A4249_RS11905 are separated by 216 nucleotidesA4249_RS11905 and A4249_RS11910 are separated by 60 nucleotidesA4249_RS11910 and A4249_RS11915 are separated by 93 nucleotides A4249_RS11900: A4249_RS11900 - hypothetical protein, at 2,389,840 to 2,392,710 _RS11900 A4249_RS11905: A4249_RS11905 - hypothetical protein, at 2,392,927 to 2,393,145 _RS11905 A4249_RS11910: A4249_RS11910 - pyridoxamine 5'-phosphate oxidase family protein, at 2,393,206 to 2,393,703 _RS11910 A4249_RS11915: A4249_RS11915 - hypothetical protein, at 2,393,797 to 2,394,474 _RS11915 Position (kb) 2392 2393 2394Strain fitness (log2 ratio) -2 -1 0 1 2at 2392.187 kb on + strand, within A4249_RS11900at 2392.496 kb on + strandat 2392.496 kb on + strandat 2392.496 kb on + strandat 2392.497 kb on - strandat 2392.497 kb on - strandat 2392.497 kb on - strandat 2392.497 kb on - strandat 2392.497 kb on - strandat 2392.497 kb on - strandat 2392.497 kb on - strandat 2392.535 kb on + strandat 2392.571 kb on + strandat 2392.742 kb on + strandat 2392.742 kb on + strandat 2392.742 kb on + strandat 2392.743 kb on - strandat 2392.744 kb on + strandat 2392.745 kb on - strandat 2392.764 kb on + strandat 2392.789 kb on + strandat 2392.789 kb on + strandat 2392.789 kb on + strandat 2393.084 kb on + strand, within A4249_RS11905at 2393.085 kb on - strand, within A4249_RS11905at 2393.085 kb on - strand, within A4249_RS11905at 2393.085 kb on - strand, within A4249_RS11905at 2393.085 kb on - strand, within A4249_RS11905at 2393.085 kb on - strand, within A4249_RS11905at 2393.133 kb on - strandat 2393.143 kb on + strandat 2393.144 kb on - strandat 2393.144 kb on - strandat 2393.144 kb on - strandat 2393.160 kb on + strandat 2393.160 kb on + strandat 2393.303 kb on - strand, within A4249_RS11910at 2393.346 kb on + strand, within A4249_RS11910at 2393.425 kb on + strand, within A4249_RS11910at 2393.425 kb on + strand, within A4249_RS11910at 2393.426 kb on - strand, within A4249_RS11910at 2393.426 kb on - strand, within A4249_RS11910at 2393.506 kb on + strand, within A4249_RS11910at 2393.506 kb on + strand, within A4249_RS11910at 2393.507 kb on - strand, within A4249_RS11910at 2393.507 kb on - strand, within A4249_RS11910at 2393.507 kb on - strand, within A4249_RS11910at 2393.507 kb on - strand, within A4249_RS11910at 2393.507 kb on - strand, within A4249_RS11910at 2393.632 kb on + strand, within A4249_RS11910at 2393.633 kb on - strand, within A4249_RS11910at 2393.701 kb on + strandat 2393.701 kb on + strandat 2393.719 kb on + strandat 2393.719 kb on + strandat 2393.719 kb on + strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.720 kb on - strandat 2393.897 kb on + strand, within A4249_RS11915at 2393.898 kb on - strand, within A4249_RS11915at 2393.898 kb on - strand, within A4249_RS11915at 2393.898 kb on - strand, within A4249_RS11915

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,392,187 + A4249_RS11900 0.82 +0.6
2,392,496 + -0.2
2,392,496 + +0.6
2,392,496 + -0.7
2,392,497 - +0.4
2,392,497 - -1.3
2,392,497 - +0.3
2,392,497 - -1.0
2,392,497 - -0.4
2,392,497 - +2.1
2,392,497 - -0.5
2,392,535 + +0.7
2,392,571 + -1.3
2,392,742 + -0.9
2,392,742 + -1.2
2,392,742 + -0.8
2,392,743 - -0.3
2,392,744 + -0.5
2,392,745 - -0.6
2,392,764 + +0.5
2,392,789 + -0.5
2,392,789 + +0.1
2,392,789 + -1.4
2,393,084 + A4249_RS11905 0.72 -0.3
2,393,085 - A4249_RS11905 0.72 +0.3
2,393,085 - A4249_RS11905 0.72 -2.2
2,393,085 - A4249_RS11905 0.72 +0.3
2,393,085 - A4249_RS11905 0.72 -1.8
2,393,085 - A4249_RS11905 0.72 -1.0
2,393,133 - +0.9
2,393,143 + -0.6
2,393,144 - -0.3
2,393,144 - -0.6
2,393,144 - +0.0
2,393,160 + +0.0
2,393,160 + -0.2
2,393,303 - A4249_RS11910 0.19 -0.1
2,393,346 + A4249_RS11910 0.28 +0.4
2,393,425 + A4249_RS11910 0.44 -0.6
2,393,425 + A4249_RS11910 0.44 +0.8
2,393,426 - A4249_RS11910 0.44 -0.2
2,393,426 - A4249_RS11910 0.44 -0.3
2,393,506 + A4249_RS11910 0.60 +1.2
2,393,506 + A4249_RS11910 0.60 -0.3
2,393,507 - A4249_RS11910 0.60 +0.7
2,393,507 - A4249_RS11910 0.60 +0.8
2,393,507 - A4249_RS11910 0.60 -0.3
2,393,507 - A4249_RS11910 0.60 +0.5
2,393,507 - A4249_RS11910 0.60 -0.2
2,393,632 + A4249_RS11910 0.86 -0.0
2,393,633 - A4249_RS11910 0.86 -0.1
2,393,701 + -0.6
2,393,701 + -0.5
2,393,719 + -1.4
2,393,719 + +0.8
2,393,719 + -0.7
2,393,720 - -0.1
2,393,720 - -0.2
2,393,720 - +1.2
2,393,720 - -0.5
2,393,720 - +2.0
2,393,897 + A4249_RS11915 0.15 +0.2
2,393,898 - A4249_RS11915 0.15 -0.5
2,393,898 - A4249_RS11915 0.15 -0.4
2,393,898 - A4249_RS11915 0.15 -0.8

Or see this region's nucleotide sequence