Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11460

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11450 and A4249_RS11455 are separated by 14 nucleotidesA4249_RS11455 and A4249_RS11460 overlap by 1 nucleotidesA4249_RS11460 and A4249_RS11465 are separated by 32 nucleotidesA4249_RS11465 and A4249_RS11470 are separated by 1 nucleotides A4249_RS11450: A4249_RS11450 - histidinol-phosphate transaminase, at 2,302,635 to 2,303,738 _RS11450 A4249_RS11455: A4249_RS11455 - hypothetical protein, at 2,303,753 to 2,304,439 _RS11455 A4249_RS11460: A4249_RS11460 - DUF2125 domain-containing protein, at 2,304,439 to 2,305,497 _RS11460 A4249_RS11465: A4249_RS11465 - Cys-tRNA(Pro) deacylase, at 2,305,530 to 2,306,003 _RS11465 A4249_RS11470: A4249_RS11470 - ATP-dependent DNA helicase, at 2,306,005 to 2,308,860 _RS11470 Position (kb) 2304 2305 2306Strain fitness (log2 ratio) -2 -1 0 1 2at 2303.545 kb on + strand, within A4249_RS11450at 2303.545 kb on + strand, within A4249_RS11450at 2303.545 kb on + strand, within A4249_RS11450at 2303.545 kb on + strand, within A4249_RS11450at 2303.546 kb on - strand, within A4249_RS11450at 2303.555 kb on + strand, within A4249_RS11450at 2303.555 kb on + strand, within A4249_RS11450at 2303.555 kb on + strand, within A4249_RS11450at 2303.556 kb on - strand, within A4249_RS11450at 2303.575 kb on + strand, within A4249_RS11450at 2303.576 kb on - strand, within A4249_RS11450at 2303.576 kb on - strand, within A4249_RS11450at 2303.674 kb on + strandat 2303.674 kb on + strandat 2303.675 kb on - strandat 2303.675 kb on - strandat 2303.832 kb on + strand, within A4249_RS11455at 2303.832 kb on + strand, within A4249_RS11455at 2303.832 kb on + strand, within A4249_RS11455at 2303.832 kb on + strand, within A4249_RS11455at 2303.833 kb on - strand, within A4249_RS11455at 2303.833 kb on - strand, within A4249_RS11455at 2303.833 kb on - strand, within A4249_RS11455at 2303.833 kb on - strand, within A4249_RS11455at 2303.833 kb on - strand, within A4249_RS11455at 2303.833 kb on - strand, within A4249_RS11455at 2304.177 kb on + strand, within A4249_RS11455at 2304.977 kb on + strand, within A4249_RS11460at 2304.977 kb on + strand, within A4249_RS11460at 2304.977 kb on + strand, within A4249_RS11460at 2304.977 kb on + strand, within A4249_RS11460at 2304.978 kb on - strand, within A4249_RS11460at 2304.978 kb on - strand, within A4249_RS11460at 2304.978 kb on - strand, within A4249_RS11460at 2305.196 kb on + strand, within A4249_RS11460at 2305.196 kb on + strand, within A4249_RS11460at 2305.197 kb on - strand, within A4249_RS11460at 2305.197 kb on - strand, within A4249_RS11460at 2305.197 kb on - strand, within A4249_RS11460at 2305.197 kb on - strand, within A4249_RS11460at 2305.197 kb on - strand, within A4249_RS11460at 2305.451 kb on + strandat 2305.451 kb on + strandat 2305.451 kb on + strandat 2305.451 kb on + strandat 2305.452 kb on - strandat 2305.452 kb on - strandat 2305.452 kb on - strandat 2305.452 kb on - strandat 2305.452 kb on - strandat 2305.452 kb on - strandat 2305.452 kb on - strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.506 kb on + strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.507 kb on - strandat 2305.509 kb on - strandat 2305.531 kb on + strandat 2305.531 kb on + strandat 2305.532 kb on - strandat 2305.664 kb on + strand, within A4249_RS11465at 2305.711 kb on + strand, within A4249_RS11465at 2305.711 kb on + strand, within A4249_RS11465at 2305.711 kb on + strand, within A4249_RS11465at 2305.712 kb on - strand, within A4249_RS11465at 2305.712 kb on - strand, within A4249_RS11465at 2305.930 kb on + strand, within A4249_RS11465at 2305.930 kb on + strand, within A4249_RS11465at 2305.930 kb on + strand, within A4249_RS11465at 2305.931 kb on - strand, within A4249_RS11465at 2305.931 kb on - strand, within A4249_RS11465at 2305.931 kb on - strand, within A4249_RS11465at 2305.931 kb on - strand, within A4249_RS11465at 2305.931 kb on - strand, within A4249_RS11465at 2305.931 kb on - strand, within A4249_RS11465at 2305.937 kb on - strand, within A4249_RS11465at 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.006 kb on + strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.007 kb on - strandat 2306.132 kb on - strandat 2306.213 kb on + strandat 2306.213 kb on + strandat 2306.213 kb on + strandat 2306.214 kb on - strandat 2306.214 kb on - strandat 2306.423 kb on + strand, within A4249_RS11470at 2306.423 kb on + strand, within A4249_RS11470at 2306.424 kb on - strand, within A4249_RS11470at 2306.468 kb on + strand, within A4249_RS11470at 2306.468 kb on + strand, within A4249_RS11470at 2306.468 kb on + strand, within A4249_RS11470at 2306.468 kb on + strand, within A4249_RS11470at 2306.468 kb on + strand, within A4249_RS11470at 2306.469 kb on - strand, within A4249_RS11470

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,303,545 + A4249_RS11450 0.82 +0.7
2,303,545 + A4249_RS11450 0.82 -0.6
2,303,545 + A4249_RS11450 0.82 +0.9
2,303,545 + A4249_RS11450 0.82 -0.8
2,303,546 - A4249_RS11450 0.83 +0.0
2,303,555 + A4249_RS11450 0.83 -0.4
2,303,555 + A4249_RS11450 0.83 +0.8
2,303,555 + A4249_RS11450 0.83 +1.5
2,303,556 - A4249_RS11450 0.83 -0.0
2,303,575 + A4249_RS11450 0.85 +1.7
2,303,576 - A4249_RS11450 0.85 +1.5
2,303,576 - A4249_RS11450 0.85 +0.2
2,303,674 + +1.1
2,303,674 + +0.7
2,303,675 - +0.4
2,303,675 - -0.4
2,303,832 + A4249_RS11455 0.11 +0.1
2,303,832 + A4249_RS11455 0.11 +0.3
2,303,832 + A4249_RS11455 0.11 +0.1
2,303,832 + A4249_RS11455 0.11 -1.3
2,303,833 - A4249_RS11455 0.12 -0.7
2,303,833 - A4249_RS11455 0.12 +0.1
2,303,833 - A4249_RS11455 0.12 -0.6
2,303,833 - A4249_RS11455 0.12 +0.0
2,303,833 - A4249_RS11455 0.12 -1.5
2,303,833 - A4249_RS11455 0.12 +0.9
2,304,177 + A4249_RS11455 0.62 +0.7
2,304,977 + A4249_RS11460 0.51 -0.9
2,304,977 + A4249_RS11460 0.51 -0.4
2,304,977 + A4249_RS11460 0.51 +1.1
2,304,977 + A4249_RS11460 0.51 +1.2
2,304,978 - A4249_RS11460 0.51 -0.9
2,304,978 - A4249_RS11460 0.51 +1.5
2,304,978 - A4249_RS11460 0.51 -0.7
2,305,196 + A4249_RS11460 0.71 +1.8
2,305,196 + A4249_RS11460 0.71 +0.5
2,305,197 - A4249_RS11460 0.72 +1.2
2,305,197 - A4249_RS11460 0.72 +1.5
2,305,197 - A4249_RS11460 0.72 +0.4
2,305,197 - A4249_RS11460 0.72 +1.4
2,305,197 - A4249_RS11460 0.72 +0.3
2,305,451 + +0.3
2,305,451 + +1.0
2,305,451 + -0.5
2,305,451 + +0.2
2,305,452 - -0.2
2,305,452 - +0.6
2,305,452 - +1.1
2,305,452 - -1.6
2,305,452 - +0.7
2,305,452 - -0.1
2,305,452 - +0.2
2,305,506 + +0.1
2,305,506 + +0.5
2,305,506 + +0.5
2,305,506 + -0.1
2,305,506 + -0.5
2,305,506 + +0.4
2,305,506 + +1.2
2,305,506 + -1.0
2,305,507 - -0.6
2,305,507 - -0.5
2,305,507 - -0.8
2,305,507 - -0.2
2,305,507 - -0.8
2,305,507 - -0.9
2,305,507 - -1.2
2,305,507 - +0.9
2,305,507 - -0.1
2,305,507 - -1.0
2,305,509 - +0.2
2,305,531 + +0.1
2,305,531 + -0.1
2,305,532 - +0.4
2,305,664 + A4249_RS11465 0.28 +0.2
2,305,711 + A4249_RS11465 0.38 -0.6
2,305,711 + A4249_RS11465 0.38 -0.5
2,305,711 + A4249_RS11465 0.38 -1.1
2,305,712 - A4249_RS11465 0.38 -0.4
2,305,712 - A4249_RS11465 0.38 -0.5
2,305,930 + A4249_RS11465 0.84 +0.3
2,305,930 + A4249_RS11465 0.84 -0.4
2,305,930 + A4249_RS11465 0.84 +0.0
2,305,931 - A4249_RS11465 0.85 -0.8
2,305,931 - A4249_RS11465 0.85 -1.2
2,305,931 - A4249_RS11465 0.85 -1.5
2,305,931 - A4249_RS11465 0.85 -1.4
2,305,931 - A4249_RS11465 0.85 +0.1
2,305,931 - A4249_RS11465 0.85 +0.1
2,305,937 - A4249_RS11465 0.86 -0.3
2,306,006 + -0.5
2,306,006 + -0.3
2,306,006 + +0.1
2,306,006 + -0.0
2,306,006 + -1.3
2,306,006 + -1.0
2,306,006 + +0.5
2,306,006 + +0.1
2,306,006 + -0.6
2,306,006 + -0.1
2,306,006 + +1.4
2,306,006 + +0.6
2,306,006 + +0.0
2,306,006 + +0.1
2,306,006 + -0.3
2,306,007 - +1.3
2,306,007 - -0.4
2,306,007 - -1.1
2,306,007 - +0.2
2,306,007 - +1.6
2,306,007 - -1.4
2,306,007 - +1.1
2,306,007 - -0.1
2,306,007 - +0.6
2,306,007 - -0.9
2,306,007 - -0.7
2,306,132 - +0.2
2,306,213 + +0.4
2,306,213 + +0.1
2,306,213 + -0.1
2,306,214 - +0.1
2,306,214 - -2.1
2,306,423 + A4249_RS11470 0.15 -0.8
2,306,423 + A4249_RS11470 0.15 -0.7
2,306,424 - A4249_RS11470 0.15 +1.0
2,306,468 + A4249_RS11470 0.16 +0.5
2,306,468 + A4249_RS11470 0.16 -0.1
2,306,468 + A4249_RS11470 0.16 +0.0
2,306,468 + A4249_RS11470 0.16 -0.0
2,306,468 + A4249_RS11470 0.16 +0.4
2,306,469 - A4249_RS11470 0.16 -1.7

Or see this region's nucleotide sequence