Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS10825 and A4249_RS10830 overlap by 4 nucleotides A4249_RS10830 and A4249_RS10835 are separated by 70 nucleotides A4249_RS10835 and A4249_RS10840 are separated by 44 nucleotides
A4249_RS10825: A4249_RS10825 - heme lyase CcmF/NrfE family subunit, at 2,174,653 to 2,176,641
_RS10825
A4249_RS10830: A4249_RS10830 - cytochrome c maturation protein CcmE, at 2,176,638 to 2,177,123
_RS10830
A4249_RS10835: A4249_RS10835 - c-type cytochrome biogenesis protein CcmI, at 2,177,194 to 2,178,012
_RS10835
A4249_RS10840: A4249_RS10840 - hypothetical protein, at 2,178,057 to 2,179,412
_RS10840
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2176.641 kb on + strand at 2176.642 kb on - strand at 2176.728 kb on - strand, within A4249_RS10830 at 2177.123 kb on + strand at 2177.123 kb on + strand at 2177.123 kb on + strand at 2177.124 kb on - strand at 2177.124 kb on - strand at 2177.124 kb on - strand at 2177.124 kb on - strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.163 kb on + strand at 2177.164 kb on - strand at 2177.164 kb on - strand at 2177.164 kb on - strand at 2177.164 kb on - strand at 2177.164 kb on - strand at 2177.164 kb on - strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.165 kb on + strand at 2177.166 kb on - strand at 2177.166 kb on - strand at 2177.166 kb on - strand at 2177.166 kb on - strand at 2177.166 kb on - strand at 2177.166 kb on - strand at 2177.166 kb on - strand at 2177.663 kb on + strand, within A4249_RS10835 at 2177.663 kb on + strand, within A4249_RS10835 at 2177.664 kb on - strand, within A4249_RS10835 at 2177.702 kb on + strand, within A4249_RS10835 at 2177.702 kb on + strand, within A4249_RS10835 at 2177.702 kb on + strand, within A4249_RS10835 at 2177.703 kb on - strand, within A4249_RS10835 at 2177.703 kb on - strand, within A4249_RS10835 at 2177.703 kb on - strand, within A4249_RS10835 at 2177.703 kb on - strand, within A4249_RS10835 at 2177.703 kb on - strand, within A4249_RS10835 at 2177.837 kb on + strand, within A4249_RS10835 at 2177.837 kb on + strand, within A4249_RS10835 at 2177.838 kb on - strand, within A4249_RS10835 at 2177.838 kb on - strand, within A4249_RS10835 at 2177.838 kb on - strand, within A4249_RS10835 at 2177.838 kb on - strand, within A4249_RS10835 at 2177.838 kb on - strand, within A4249_RS10835 at 2178.023 kb on + strand at 2178.023 kb on + strand at 2178.238 kb on + strand, within A4249_RS10840 at 2178.238 kb on + strand, within A4249_RS10840 at 2178.239 kb on - strand, within A4249_RS10840 at 2178.239 kb on - strand, within A4249_RS10840 at 2178.239 kb on - strand, within A4249_RS10840 at 2178.239 kb on - strand, within A4249_RS10840 at 2178.564 kb on + strand, within A4249_RS10840 at 2178.565 kb on - strand, within A4249_RS10840 at 2178.565 kb on - strand, within A4249_RS10840 at 2178.875 kb on + strand, within A4249_RS10840 at 2178.875 kb on + strand, within A4249_RS10840 at 2178.875 kb on + strand, within A4249_RS10840 at 2178.876 kb on - strand, within A4249_RS10840
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 2,176,641 + -0.2 2,176,642 - +0.9 2,176,728 - A4249_RS10830 0.19 +1.7 2,177,123 + +1.7 2,177,123 + -0.2 2,177,123 + +0.1 2,177,124 - +0.9 2,177,124 - -2.5 2,177,124 - -0.2 2,177,124 - +0.9 2,177,163 + +2.1 2,177,163 + +1.1 2,177,163 + -0.6 2,177,163 + -0.7 2,177,163 + -0.6 2,177,163 + -0.2 2,177,163 + -0.3 2,177,163 + -1.4 2,177,163 + -0.3 2,177,163 + +0.6 2,177,163 + +0.3 2,177,163 + -0.6 2,177,163 + -0.6 2,177,164 - +0.9 2,177,164 - -0.2 2,177,164 - -1.2 2,177,164 - +0.5 2,177,164 - -0.5 2,177,164 - -0.2 2,177,165 + +0.1 2,177,165 + -0.7 2,177,165 + +0.6 2,177,165 + +0.7 2,177,165 + -0.4 2,177,165 + -0.3 2,177,165 + -0.2 2,177,165 + +0.1 2,177,166 - -0.1 2,177,166 - +1.1 2,177,166 - -0.9 2,177,166 - +0.3 2,177,166 - +0.3 2,177,166 - -0.4 2,177,166 - -0.8 2,177,663 + A4249_RS10835 0.57 +1.9 2,177,663 + A4249_RS10835 0.57 -0.5 2,177,664 - A4249_RS10835 0.57 +0.1 2,177,702 + A4249_RS10835 0.62 +1.1 2,177,702 + A4249_RS10835 0.62 -0.5 2,177,702 + A4249_RS10835 0.62 +0.1 2,177,703 - A4249_RS10835 0.62 +1.9 2,177,703 - A4249_RS10835 0.62 -0.1 2,177,703 - A4249_RS10835 0.62 +0.7 2,177,703 - A4249_RS10835 0.62 +0.2 2,177,703 - A4249_RS10835 0.62 -1.0 2,177,837 + A4249_RS10835 0.79 -0.9 2,177,837 + A4249_RS10835 0.79 -0.3 2,177,838 - A4249_RS10835 0.79 -0.2 2,177,838 - A4249_RS10835 0.79 -0.1 2,177,838 - A4249_RS10835 0.79 +0.7 2,177,838 - A4249_RS10835 0.79 -0.8 2,177,838 - A4249_RS10835 0.79 -0.5 2,178,023 + +0.5 2,178,023 + +0.9 2,178,238 + A4249_RS10840 0.13 -0.8 2,178,238 + A4249_RS10840 0.13 -0.2 2,178,239 - A4249_RS10840 0.13 +0.1 2,178,239 - A4249_RS10840 0.13 -0.1 2,178,239 - A4249_RS10840 0.13 -0.1 2,178,239 - A4249_RS10840 0.13 -1.0 2,178,564 + A4249_RS10840 0.37 -0.6 2,178,565 - A4249_RS10840 0.37 -1.1 2,178,565 - A4249_RS10840 0.37 -0.3 2,178,875 + A4249_RS10840 0.60 +0.8 2,178,875 + A4249_RS10840 0.60 -1.0 2,178,875 + A4249_RS10840 0.60 +0.1 2,178,876 - A4249_RS10840 0.60 +0.2
Or see this region's nucleotide sequence