Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10835

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10825 and A4249_RS10830 overlap by 4 nucleotidesA4249_RS10830 and A4249_RS10835 are separated by 70 nucleotidesA4249_RS10835 and A4249_RS10840 are separated by 44 nucleotides A4249_RS10825: A4249_RS10825 - heme lyase CcmF/NrfE family subunit, at 2,174,653 to 2,176,641 _RS10825 A4249_RS10830: A4249_RS10830 - cytochrome c maturation protein CcmE, at 2,176,638 to 2,177,123 _RS10830 A4249_RS10835: A4249_RS10835 - c-type cytochrome biogenesis protein CcmI, at 2,177,194 to 2,178,012 _RS10835 A4249_RS10840: A4249_RS10840 - hypothetical protein, at 2,178,057 to 2,179,412 _RS10840 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -2 -1 0 1 2at 2176.641 kb on + strandat 2176.642 kb on - strandat 2176.728 kb on - strand, within A4249_RS10830at 2177.123 kb on + strandat 2177.123 kb on + strandat 2177.123 kb on + strandat 2177.124 kb on - strandat 2177.124 kb on - strandat 2177.124 kb on - strandat 2177.124 kb on - strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.163 kb on + strandat 2177.164 kb on - strandat 2177.164 kb on - strandat 2177.164 kb on - strandat 2177.164 kb on - strandat 2177.164 kb on - strandat 2177.164 kb on - strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.165 kb on + strandat 2177.166 kb on - strandat 2177.166 kb on - strandat 2177.166 kb on - strandat 2177.166 kb on - strandat 2177.166 kb on - strandat 2177.166 kb on - strandat 2177.166 kb on - strandat 2177.663 kb on + strand, within A4249_RS10835at 2177.663 kb on + strand, within A4249_RS10835at 2177.664 kb on - strand, within A4249_RS10835at 2177.702 kb on + strand, within A4249_RS10835at 2177.702 kb on + strand, within A4249_RS10835at 2177.702 kb on + strand, within A4249_RS10835at 2177.703 kb on - strand, within A4249_RS10835at 2177.703 kb on - strand, within A4249_RS10835at 2177.703 kb on - strand, within A4249_RS10835at 2177.703 kb on - strand, within A4249_RS10835at 2177.703 kb on - strand, within A4249_RS10835at 2177.837 kb on + strand, within A4249_RS10835at 2177.837 kb on + strand, within A4249_RS10835at 2177.838 kb on - strand, within A4249_RS10835at 2177.838 kb on - strand, within A4249_RS10835at 2177.838 kb on - strand, within A4249_RS10835at 2177.838 kb on - strand, within A4249_RS10835at 2177.838 kb on - strand, within A4249_RS10835at 2178.023 kb on + strandat 2178.023 kb on + strandat 2178.238 kb on + strand, within A4249_RS10840at 2178.238 kb on + strand, within A4249_RS10840at 2178.239 kb on - strand, within A4249_RS10840at 2178.239 kb on - strand, within A4249_RS10840at 2178.239 kb on - strand, within A4249_RS10840at 2178.239 kb on - strand, within A4249_RS10840at 2178.564 kb on + strand, within A4249_RS10840at 2178.565 kb on - strand, within A4249_RS10840at 2178.565 kb on - strand, within A4249_RS10840at 2178.875 kb on + strand, within A4249_RS10840at 2178.875 kb on + strand, within A4249_RS10840at 2178.875 kb on + strand, within A4249_RS10840at 2178.876 kb on - strand, within A4249_RS10840

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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2,176,641 + -0.2
2,176,642 - +0.9
2,176,728 - A4249_RS10830 0.19 +1.7
2,177,123 + +1.7
2,177,123 + -0.2
2,177,123 + +0.1
2,177,124 - +0.9
2,177,124 - -2.5
2,177,124 - -0.2
2,177,124 - +0.9
2,177,163 + +2.1
2,177,163 + +1.1
2,177,163 + -0.6
2,177,163 + -0.7
2,177,163 + -0.6
2,177,163 + -0.2
2,177,163 + -0.3
2,177,163 + -1.4
2,177,163 + -0.3
2,177,163 + +0.6
2,177,163 + +0.3
2,177,163 + -0.6
2,177,163 + -0.6
2,177,164 - +0.9
2,177,164 - -0.2
2,177,164 - -1.2
2,177,164 - +0.5
2,177,164 - -0.5
2,177,164 - -0.2
2,177,165 + +0.1
2,177,165 + -0.7
2,177,165 + +0.6
2,177,165 + +0.7
2,177,165 + -0.4
2,177,165 + -0.3
2,177,165 + -0.2
2,177,165 + +0.1
2,177,166 - -0.1
2,177,166 - +1.1
2,177,166 - -0.9
2,177,166 - +0.3
2,177,166 - +0.3
2,177,166 - -0.4
2,177,166 - -0.8
2,177,663 + A4249_RS10835 0.57 +1.9
2,177,663 + A4249_RS10835 0.57 -0.5
2,177,664 - A4249_RS10835 0.57 +0.1
2,177,702 + A4249_RS10835 0.62 +1.1
2,177,702 + A4249_RS10835 0.62 -0.5
2,177,702 + A4249_RS10835 0.62 +0.1
2,177,703 - A4249_RS10835 0.62 +1.9
2,177,703 - A4249_RS10835 0.62 -0.1
2,177,703 - A4249_RS10835 0.62 +0.7
2,177,703 - A4249_RS10835 0.62 +0.2
2,177,703 - A4249_RS10835 0.62 -1.0
2,177,837 + A4249_RS10835 0.79 -0.9
2,177,837 + A4249_RS10835 0.79 -0.3
2,177,838 - A4249_RS10835 0.79 -0.2
2,177,838 - A4249_RS10835 0.79 -0.1
2,177,838 - A4249_RS10835 0.79 +0.7
2,177,838 - A4249_RS10835 0.79 -0.8
2,177,838 - A4249_RS10835 0.79 -0.5
2,178,023 + +0.5
2,178,023 + +0.9
2,178,238 + A4249_RS10840 0.13 -0.8
2,178,238 + A4249_RS10840 0.13 -0.2
2,178,239 - A4249_RS10840 0.13 +0.1
2,178,239 - A4249_RS10840 0.13 -0.1
2,178,239 - A4249_RS10840 0.13 -0.1
2,178,239 - A4249_RS10840 0.13 -1.0
2,178,564 + A4249_RS10840 0.37 -0.6
2,178,565 - A4249_RS10840 0.37 -1.1
2,178,565 - A4249_RS10840 0.37 -0.3
2,178,875 + A4249_RS10840 0.60 +0.8
2,178,875 + A4249_RS10840 0.60 -1.0
2,178,875 + A4249_RS10840 0.60 +0.1
2,178,876 - A4249_RS10840 0.60 +0.2

Or see this region's nucleotide sequence