Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06190

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06185 and A4249_RS06190 overlap by 2 nucleotidesA4249_RS06190 and A4249_RS06195 are separated by 66 nucleotides A4249_RS06185: A4249_RS06185 - ComEC/Rec2 family competence protein, at 1,257,971 to 1,260,157 _RS06185 A4249_RS06190: A4249_RS06190 - glutamate--tRNA ligase, at 1,260,156 to 1,261,571 _RS06190 A4249_RS06195: A4249_RS06195 - citrate synthase, at 1,261,638 to 1,262,939 _RS06195 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -3 -2 -1 0 1at 1259.281 kb on + strand, within A4249_RS06185at 1259.281 kb on + strand, within A4249_RS06185at 1259.282 kb on - strand, within A4249_RS06185at 1259.282 kb on - strand, within A4249_RS06185at 1259.357 kb on - strand, within A4249_RS06185at 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.997 kb on + strandat 1259.998 kb on - strandat 1259.998 kb on - strandat 1259.998 kb on - strandat 1259.998 kb on - strandat 1260.036 kb on - strandat 1260.104 kb on - strandat 1260.104 kb on - strandat 1260.104 kb on - strandat 1260.125 kb on + strandat 1260.126 kb on - strandat 1260.126 kb on - strandat 1260.126 kb on - strandat 1260.126 kb on - strandat 1260.127 kb on + strandat 1260.127 kb on + strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.128 kb on - strandat 1260.140 kb on + strandat 1261.565 kb on + strandat 1261.565 kb on + strandat 1261.565 kb on + strandat 1261.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,259,281 + A4249_RS06185 0.60 +1.5
1,259,281 + A4249_RS06185 0.60 +1.1
1,259,282 - A4249_RS06185 0.60 -0.8
1,259,282 - A4249_RS06185 0.60 +0.1
1,259,357 - A4249_RS06185 0.63 +0.7
1,259,997 + +0.1
1,259,997 + -0.0
1,259,997 + -0.6
1,259,997 + -0.0
1,259,997 + -0.5
1,259,997 + +0.1
1,259,997 + +0.5
1,259,998 - -1.0
1,259,998 - -0.3
1,259,998 - +1.5
1,259,998 - -0.7
1,260,036 - +0.3
1,260,104 - +0.1
1,260,104 - +0.3
1,260,104 - -0.2
1,260,125 + -0.5
1,260,126 - +0.2
1,260,126 - +0.0
1,260,126 - -0.5
1,260,126 - -0.5
1,260,127 + -1.0
1,260,127 + +1.4
1,260,128 - -0.4
1,260,128 - +0.4
1,260,128 - -2.8
1,260,128 - +0.5
1,260,128 - +0.0
1,260,140 + -1.3
1,261,565 + +0.1
1,261,565 + +0.7
1,261,565 + -0.1
1,261,565 + +1.1

Or see this region's nucleotide sequence