Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05045

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05040 and A4249_RS05045 are separated by 19 nucleotidesA4249_RS05045 and A4249_RS05050 are separated by 9 nucleotidesA4249_RS05050 and A4249_RS05055 are separated by 57 nucleotides A4249_RS05040: A4249_RS05040 - NADH:flavin oxidoreductase, at 1,042,761 to 1,043,858 _RS05040 A4249_RS05045: A4249_RS05045 - YbjQ family protein, at 1,043,878 to 1,044,198 _RS05045 A4249_RS05050: A4249_RS05050 - dihydrofolate reductase, at 1,044,208 to 1,044,735 _RS05050 A4249_RS05055: A4249_RS05055 - hypothetical protein, at 1,044,793 to 1,045,380 _RS05055 Position (kb) 1043 1044 1045Strain fitness (log2 ratio) -2 -1 0 1 2at 1042.887 kb on + strand, within A4249_RS05040at 1042.887 kb on + strand, within A4249_RS05040at 1042.888 kb on - strand, within A4249_RS05040at 1042.888 kb on - strand, within A4249_RS05040at 1042.891 kb on - strand, within A4249_RS05040at 1043.052 kb on - strand, within A4249_RS05040at 1043.052 kb on - strand, within A4249_RS05040at 1043.277 kb on + strand, within A4249_RS05040at 1043.277 kb on + strand, within A4249_RS05040at 1043.277 kb on + strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.278 kb on - strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.308 kb on + strand, within A4249_RS05040at 1043.451 kb on + strand, within A4249_RS05040at 1043.451 kb on + strand, within A4249_RS05040at 1043.451 kb on + strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.452 kb on - strand, within A4249_RS05040at 1043.880 kb on - strandat 1043.910 kb on - strand, within A4249_RS05045at 1043.954 kb on + strand, within A4249_RS05045at 1043.955 kb on - strand, within A4249_RS05045at 1044.014 kb on + strand, within A4249_RS05045at 1044.014 kb on + strand, within A4249_RS05045at 1044.014 kb on + strand, within A4249_RS05045at 1044.015 kb on - strand, within A4249_RS05045at 1044.015 kb on - strand, within A4249_RS05045at 1044.015 kb on - strand, within A4249_RS05045at 1044.015 kb on - strand, within A4249_RS05045at 1044.050 kb on + strand, within A4249_RS05045at 1044.051 kb on - strand, within A4249_RS05045at 1044.051 kb on - strand, within A4249_RS05045at 1044.051 kb on - strand, within A4249_RS05045at 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.194 kb on + strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.195 kb on - strandat 1044.209 kb on + strandat 1044.749 kb on - strandat 1044.802 kb on + strandat 1044.802 kb on + strandat 1044.802 kb on + strandat 1044.802 kb on + strandat 1044.802 kb on + strandat 1044.803 kb on - strandat 1044.803 kb on - strandat 1044.803 kb on - strandat 1044.803 kb on - strandat 1044.803 kb on - strandat 1044.803 kb on - strandat 1044.803 kb on - strandat 1044.896 kb on - strand, within A4249_RS05055at 1044.896 kb on - strand, within A4249_RS05055at 1044.896 kb on - strand, within A4249_RS05055at 1044.940 kb on + strand, within A4249_RS05055at 1044.940 kb on + strand, within A4249_RS05055at 1044.940 kb on + strand, within A4249_RS05055at 1044.940 kb on + strand, within A4249_RS05055at 1044.940 kb on + strand, within A4249_RS05055at 1044.941 kb on - strand, within A4249_RS05055at 1044.941 kb on - strand, within A4249_RS05055at 1044.941 kb on - strand, within A4249_RS05055at 1044.941 kb on - strand, within A4249_RS05055at 1044.956 kb on + strand, within A4249_RS05055at 1044.957 kb on - strand, within A4249_RS05055at 1044.957 kb on - strand, within A4249_RS05055at 1045.054 kb on + strand, within A4249_RS05055

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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1,042,887 + A4249_RS05040 0.11 -0.3
1,042,887 + A4249_RS05040 0.11 +0.7
1,042,888 - A4249_RS05040 0.12 -1.9
1,042,888 - A4249_RS05040 0.12 -0.5
1,042,891 - A4249_RS05040 0.12 -0.6
1,043,052 - A4249_RS05040 0.27 +1.4
1,043,052 - A4249_RS05040 0.27 -2.1
1,043,277 + A4249_RS05040 0.47 -0.9
1,043,277 + A4249_RS05040 0.47 +1.6
1,043,277 + A4249_RS05040 0.47 -0.3
1,043,278 - A4249_RS05040 0.47 +0.9
1,043,278 - A4249_RS05040 0.47 +0.4
1,043,278 - A4249_RS05040 0.47 -0.8
1,043,278 - A4249_RS05040 0.47 +0.2
1,043,308 + A4249_RS05040 0.50 +0.6
1,043,308 + A4249_RS05040 0.50 +0.6
1,043,308 + A4249_RS05040 0.50 -0.2
1,043,308 + A4249_RS05040 0.50 +0.7
1,043,451 + A4249_RS05040 0.63 -0.3
1,043,451 + A4249_RS05040 0.63 +0.6
1,043,451 + A4249_RS05040 0.63 -0.6
1,043,452 - A4249_RS05040 0.63 +0.1
1,043,452 - A4249_RS05040 0.63 -0.0
1,043,452 - A4249_RS05040 0.63 -0.1
1,043,452 - A4249_RS05040 0.63 +0.6
1,043,880 - +0.4
1,043,910 - A4249_RS05045 0.10 -0.3
1,043,954 + A4249_RS05045 0.24 -0.3
1,043,955 - A4249_RS05045 0.24 +0.2
1,044,014 + A4249_RS05045 0.42 -0.3
1,044,014 + A4249_RS05045 0.42 -0.3
1,044,014 + A4249_RS05045 0.42 -0.9
1,044,015 - A4249_RS05045 0.43 -0.1
1,044,015 - A4249_RS05045 0.43 -1.1
1,044,015 - A4249_RS05045 0.43 -0.8
1,044,015 - A4249_RS05045 0.43 -0.8
1,044,050 + A4249_RS05045 0.54 -0.3
1,044,051 - A4249_RS05045 0.54 -0.1
1,044,051 - A4249_RS05045 0.54 -0.3
1,044,051 - A4249_RS05045 0.54 -0.8
1,044,194 + +0.5
1,044,194 + -0.4
1,044,194 + +0.3
1,044,194 + +1.0
1,044,194 + +0.5
1,044,194 + +0.5
1,044,194 + -1.1
1,044,194 + -0.0
1,044,194 + -1.7
1,044,194 + -0.6
1,044,194 + +0.3
1,044,194 + +0.0
1,044,195 - +0.8
1,044,195 - -2.5
1,044,195 - +0.2
1,044,195 - -1.1
1,044,195 - -0.5
1,044,195 - +0.8
1,044,195 - +0.1
1,044,195 - -0.3
1,044,195 - -0.5
1,044,195 - +1.3
1,044,195 - +0.2
1,044,195 - -1.2
1,044,209 + -0.5
1,044,749 - +0.4
1,044,802 + +1.8
1,044,802 + +0.3
1,044,802 + +0.2
1,044,802 + -0.5
1,044,802 + -0.6
1,044,803 - -1.2
1,044,803 - -0.3
1,044,803 - +0.3
1,044,803 - +0.9
1,044,803 - +1.2
1,044,803 - -0.1
1,044,803 - -0.5
1,044,896 - A4249_RS05055 0.18 +1.0
1,044,896 - A4249_RS05055 0.18 +0.3
1,044,896 - A4249_RS05055 0.18 +0.3
1,044,940 + A4249_RS05055 0.25 -0.1
1,044,940 + A4249_RS05055 0.25 -0.2
1,044,940 + A4249_RS05055 0.25 -0.2
1,044,940 + A4249_RS05055 0.25 +0.2
1,044,940 + A4249_RS05055 0.25 -0.7
1,044,941 - A4249_RS05055 0.25 +0.1
1,044,941 - A4249_RS05055 0.25 +0.0
1,044,941 - A4249_RS05055 0.25 -0.5
1,044,941 - A4249_RS05055 0.25 +0.1
1,044,956 + A4249_RS05055 0.28 +1.6
1,044,957 - A4249_RS05055 0.28 -0.1
1,044,957 - A4249_RS05055 0.28 -1.7
1,045,054 + A4249_RS05055 0.44 -0.7

Or see this region's nucleotide sequence