Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04775 and A4249_RS04780 are separated by 6 nucleotides A4249_RS04780 and A4249_RS04785 are separated by 201 nucleotides
A4249_RS04775: A4249_RS04775 - transcription-repair coupling factor, at 991,732 to 995,181
_RS04775
A4249_RS04780: A4249_RS04780 - diguanylate cyclase, at 995,188 to 996,495
_RS04780
A4249_RS04785: A4249_RS04785 - YihY/virulence factor BrkB family protein, at 996,697 to 997,641
_RS04785
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 994.309 kb on + strand, within A4249_RS04775 at 994.309 kb on + strand, within A4249_RS04775 at 994.309 kb on + strand, within A4249_RS04775 at 994.309 kb on + strand, within A4249_RS04775 at 994.309 kb on + strand, within A4249_RS04775 at 994.321 kb on + strand, within A4249_RS04775 at 994.321 kb on + strand, within A4249_RS04775 at 994.321 kb on + strand, within A4249_RS04775 at 994.322 kb on - strand, within A4249_RS04775 at 994.341 kb on + strand, within A4249_RS04775 at 994.341 kb on + strand, within A4249_RS04775 at 994.342 kb on - strand, within A4249_RS04775 at 994.342 kb on - strand, within A4249_RS04775 at 994.342 kb on - strand, within A4249_RS04775 at 994.380 kb on + strand, within A4249_RS04775 at 994.381 kb on - strand, within A4249_RS04775 at 994.427 kb on - strand, within A4249_RS04775 at 994.475 kb on - strand, within A4249_RS04775 at 994.661 kb on - strand, within A4249_RS04775 at 994.661 kb on - strand, within A4249_RS04775 at 994.780 kb on + strand, within A4249_RS04775 at 994.781 kb on - strand, within A4249_RS04775 at 994.781 kb on - strand, within A4249_RS04775 at 994.781 kb on - strand, within A4249_RS04775 at 994.813 kb on + strand, within A4249_RS04775 at 995.072 kb on + strand at 995.072 kb on + strand at 995.073 kb on - strand at 995.179 kb on + strand at 995.179 kb on + strand at 995.179 kb on + strand at 995.180 kb on - strand at 995.180 kb on - strand at 995.180 kb on - strand at 995.180 kb on - strand at 995.825 kb on + strand, within A4249_RS04780 at 995.825 kb on + strand, within A4249_RS04780 at 995.825 kb on + strand, within A4249_RS04780 at 995.825 kb on + strand, within A4249_RS04780 at 995.825 kb on + strand, within A4249_RS04780 at 995.825 kb on + strand, within A4249_RS04780 at 995.826 kb on - strand, within A4249_RS04780 at 995.826 kb on - strand, within A4249_RS04780 at 995.842 kb on - strand, within A4249_RS04780 at 995.846 kb on + strand, within A4249_RS04780 at 995.846 kb on + strand, within A4249_RS04780 at 995.846 kb on + strand, within A4249_RS04780 at 995.846 kb on + strand, within A4249_RS04780 at 995.846 kb on + strand, within A4249_RS04780 at 995.846 kb on + strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.847 kb on - strand, within A4249_RS04780 at 995.948 kb on + strand, within A4249_RS04780 at 995.948 kb on + strand, within A4249_RS04780 at 995.948 kb on + strand, within A4249_RS04780 at 995.948 kb on + strand, within A4249_RS04780 at 995.948 kb on + strand, within A4249_RS04780 at 995.949 kb on - strand, within A4249_RS04780 at 995.949 kb on - strand, within A4249_RS04780 at 995.963 kb on + strand, within A4249_RS04780 at 995.964 kb on - strand, within A4249_RS04780 at 996.134 kb on + strand, within A4249_RS04780 at 996.135 kb on - strand, within A4249_RS04780 at 996.475 kb on + strand at 996.475 kb on + strand at 996.475 kb on + strand at 996.552 kb on - strand at 996.552 kb on - strand at 996.563 kb on + strand at 996.563 kb on + strand at 996.563 kb on + strand at 996.564 kb on - strand at 996.564 kb on - strand at 996.564 kb on - strand at 996.566 kb on + strand at 996.566 kb on + strand at 996.566 kb on + strand at 996.566 kb on + strand at 996.566 kb on + strand at 996.566 kb on + strand at 996.566 kb on + strand at 996.567 kb on - strand at 996.799 kb on + strand, within A4249_RS04785 at 996.799 kb on + strand, within A4249_RS04785 at 996.799 kb on + strand, within A4249_RS04785 at 996.800 kb on - strand, within A4249_RS04785 at 996.800 kb on - strand, within A4249_RS04785 at 996.800 kb on - strand, within A4249_RS04785 at 996.800 kb on - strand, within A4249_RS04785 at 996.800 kb on - strand, within A4249_RS04785 at 996.801 kb on + strand, within A4249_RS04785 at 996.802 kb on - strand, within A4249_RS04785 at 996.868 kb on + strand, within A4249_RS04785 at 996.868 kb on + strand, within A4249_RS04785 at 996.868 kb on + strand, within A4249_RS04785 at 996.868 kb on + strand, within A4249_RS04785 at 996.869 kb on - strand, within A4249_RS04785 at 996.869 kb on - strand, within A4249_RS04785 at 997.167 kb on + strand, within A4249_RS04785 at 997.167 kb on + strand, within A4249_RS04785 at 997.168 kb on - strand, within A4249_RS04785 at 997.168 kb on - strand, within A4249_RS04785 at 997.312 kb on + strand, within A4249_RS04785 at 997.319 kb on - strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 994,309 + A4249_RS04775 0.75 -0.5 994,309 + A4249_RS04775 0.75 +1.3 994,309 + A4249_RS04775 0.75 -1.3 994,309 + A4249_RS04775 0.75 +0.6 994,309 + A4249_RS04775 0.75 -0.8 994,321 + A4249_RS04775 0.75 +0.0 994,321 + A4249_RS04775 0.75 -0.4 994,321 + A4249_RS04775 0.75 -0.3 994,322 - A4249_RS04775 0.75 +1.0 994,341 + A4249_RS04775 0.76 +0.9 994,341 + A4249_RS04775 0.76 -1.0 994,342 - A4249_RS04775 0.76 -1.1 994,342 - A4249_RS04775 0.76 +1.2 994,342 - A4249_RS04775 0.76 -1.3 994,380 + A4249_RS04775 0.77 -2.5 994,381 - A4249_RS04775 0.77 -0.7 994,427 - A4249_RS04775 0.78 -1.2 994,475 - A4249_RS04775 0.80 -0.6 994,661 - A4249_RS04775 0.85 +0.9 994,661 - A4249_RS04775 0.85 +0.7 994,780 + A4249_RS04775 0.88 +0.8 994,781 - A4249_RS04775 0.88 -0.8 994,781 - A4249_RS04775 0.88 -1.2 994,781 - A4249_RS04775 0.88 +1.1 994,813 + A4249_RS04775 0.89 +1.3 995,072 + +1.3 995,072 + +1.6 995,073 - -0.1 995,179 + -0.3 995,179 + +0.6 995,179 + -0.9 995,180 - -0.8 995,180 - +2.0 995,180 - +2.2 995,180 - -1.6 995,825 + A4249_RS04780 0.49 -1.6 995,825 + A4249_RS04780 0.49 -0.8 995,825 + A4249_RS04780 0.49 +0.2 995,825 + A4249_RS04780 0.49 +0.8 995,825 + A4249_RS04780 0.49 -0.8 995,825 + A4249_RS04780 0.49 +0.6 995,826 - A4249_RS04780 0.49 +0.2 995,826 - A4249_RS04780 0.49 -1.7 995,842 - A4249_RS04780 0.50 +0.5 995,846 + A4249_RS04780 0.50 -0.4 995,846 + A4249_RS04780 0.50 -2.1 995,846 + A4249_RS04780 0.50 -0.4 995,846 + A4249_RS04780 0.50 +0.2 995,846 + A4249_RS04780 0.50 +0.5 995,846 + A4249_RS04780 0.50 -0.6 995,847 - A4249_RS04780 0.50 -0.5 995,847 - A4249_RS04780 0.50 -0.8 995,847 - A4249_RS04780 0.50 -2.1 995,847 - A4249_RS04780 0.50 +0.4 995,847 - A4249_RS04780 0.50 -0.4 995,847 - A4249_RS04780 0.50 -0.5 995,847 - A4249_RS04780 0.50 +1.4 995,847 - A4249_RS04780 0.50 +0.0 995,847 - A4249_RS04780 0.50 -0.4 995,948 + A4249_RS04780 0.58 -0.7 995,948 + A4249_RS04780 0.58 +0.4 995,948 + A4249_RS04780 0.58 -1.8 995,948 + A4249_RS04780 0.58 +0.6 995,948 + A4249_RS04780 0.58 -0.5 995,949 - A4249_RS04780 0.58 +0.7 995,949 - A4249_RS04780 0.58 -0.9 995,963 + A4249_RS04780 0.59 -0.4 995,964 - A4249_RS04780 0.59 +0.0 996,134 + A4249_RS04780 0.72 -0.4 996,135 - A4249_RS04780 0.72 +0.5 996,475 + -0.4 996,475 + -0.1 996,475 + -0.6 996,552 - -0.5 996,552 - -1.0 996,563 + -1.1 996,563 + +0.5 996,563 + -0.3 996,564 - +0.0 996,564 - +0.9 996,564 - -0.8 996,566 + -0.1 996,566 + -0.8 996,566 + +1.4 996,566 + -0.3 996,566 + -0.3 996,566 + -0.0 996,566 + -1.0 996,567 - -0.3 996,799 + A4249_RS04785 0.11 +1.7 996,799 + A4249_RS04785 0.11 -0.4 996,799 + A4249_RS04785 0.11 +2.4 996,800 - A4249_RS04785 0.11 +0.0 996,800 - A4249_RS04785 0.11 +0.8 996,800 - A4249_RS04785 0.11 +0.3 996,800 - A4249_RS04785 0.11 +0.6 996,800 - A4249_RS04785 0.11 -0.5 996,801 + A4249_RS04785 0.11 -1.1 996,802 - A4249_RS04785 0.11 -0.1 996,868 + A4249_RS04785 0.18 +0.6 996,868 + A4249_RS04785 0.18 +1.8 996,868 + A4249_RS04785 0.18 +0.0 996,868 + A4249_RS04785 0.18 +0.2 996,869 - A4249_RS04785 0.18 +1.0 996,869 - A4249_RS04785 0.18 -0.5 997,167 + A4249_RS04785 0.50 -1.6 997,167 + A4249_RS04785 0.50 +0.5 997,168 - A4249_RS04785 0.50 +1.2 997,168 - A4249_RS04785 0.50 +1.0 997,312 + A4249_RS04785 0.65 +1.3 997,319 - A4249_RS04785 0.66 +0.3 997,420 + A4249_RS04785 0.77 +0.3 997,420 + A4249_RS04785 0.77 -0.2 997,420 + A4249_RS04785 0.77 +1.2 997,420 + A4249_RS04785 0.77 +0.1 997,420 + A4249_RS04785 0.77 +0.5 997,420 + A4249_RS04785 0.77 +0.1 997,420 + A4249_RS04785 0.77 +0.2 997,420 + A4249_RS04785 0.77 -0.7 997,420 + A4249_RS04785 0.77 +0.0 997,420 + A4249_RS04785 0.77 -1.1 997,420 + A4249_RS04785 0.77 -0.7 997,420 + A4249_RS04785 0.77 +0.7 997,420 + A4249_RS04785 0.77 +0.0 997,420 + A4249_RS04785 0.77 +0.0 997,421 - A4249_RS04785 0.77 -1.2 997,421 - A4249_RS04785 0.77 +1.2 997,421 - A4249_RS04785 0.77 +0.7 997,421 - A4249_RS04785 0.77 -1.4 997,421 - A4249_RS04785 0.77 +0.5 997,421 - A4249_RS04785 0.77 +0.5 997,421 - A4249_RS04785 0.77 +0.1 997,421 - A4249_RS04785 0.77 +0.6 997,421 - A4249_RS04785 0.77 +1.8 997,421 - A4249_RS04785 0.77 -1.0 997,421 - A4249_RS04785 0.77 +0.6 997,453 + A4249_RS04785 0.80 +0.4 997,453 + A4249_RS04785 0.80 +0.9 997,453 + A4249_RS04785 0.80 +0.2 997,453 + A4249_RS04785 0.80 +1.5 997,453 + A4249_RS04785 0.80 +0.6 997,453 + A4249_RS04785 0.80 -0.1 997,453 + A4249_RS04785 0.80 +1.6 997,453 + A4249_RS04785 0.80 -0.2 997,453 + A4249_RS04785 0.80 +0.8 997,454 - A4249_RS04785 0.80 +0.4 997,454 - A4249_RS04785 0.80 +0.6 997,454 - A4249_RS04785 0.80 -0.8 997,454 - A4249_RS04785 0.80 -1.0 997,454 - A4249_RS04785 0.80 -1.4 997,454 - A4249_RS04785 0.80 -0.4
Or see this region's nucleotide sequence