Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03300 and A4249_RS03305 are separated by 25 nucleotides A4249_RS03305 and A4249_RS03310 are separated by 108 nucleotides A4249_RS03310 and A4249_RS03315 are separated by 8 nucleotides A4249_RS03315 and A4249_RS03320 overlap by 4 nucleotides A4249_RS03320 and A4249_RS03325 are separated by 117 nucleotides
A4249_RS03300: A4249_RS03300 - copper resistance protein CopC, at 695,916 to 696,326
_RS03300
A4249_RS03305: A4249_RS03305 - hypothetical protein, at 696,352 to 696,687
_RS03305
A4249_RS03310: A4249_RS03310 - RNA polymerase sigma factor, at 696,796 to 697,374
_RS03310
A4249_RS03315: A4249_RS03315 - periplasmic heavy metal sensor, at 697,383 to 697,823
_RS03315
A4249_RS03320: A4249_RS03320 - hypothetical protein, at 697,820 to 698,101
_RS03320
A4249_RS03325: A4249_RS03325 - hypothetical protein, at 698,219 to 698,869
_RS03325
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1
2 at 695.989 kb on + strand, within A4249_RS03300 at 695.989 kb on + strand, within A4249_RS03300 at 695.990 kb on - strand, within A4249_RS03300 at 695.990 kb on - strand, within A4249_RS03300 at 696.312 kb on + strand at 696.313 kb on - strand at 696.313 kb on - strand at 696.353 kb on + strand at 696.353 kb on + strand at 696.353 kb on + strand at 696.353 kb on + strand at 696.354 kb on - strand at 696.354 kb on - strand at 696.354 kb on - strand at 696.703 kb on + strand at 696.703 kb on + strand at 696.703 kb on + strand at 696.703 kb on + strand at 696.704 kb on - strand at 696.704 kb on - strand at 696.723 kb on - strand at 696.723 kb on - strand at 696.723 kb on - strand at 696.723 kb on - strand at 696.723 kb on - strand at 696.742 kb on + strand at 696.742 kb on + strand at 696.742 kb on + strand at 696.743 kb on - strand at 696.750 kb on + strand at 697.150 kb on + strand, within A4249_RS03310 at 697.151 kb on - strand, within A4249_RS03310 at 697.151 kb on - strand, within A4249_RS03310 at 697.151 kb on - strand, within A4249_RS03310 at 697.190 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.220 kb on + strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.221 kb on - strand, within A4249_RS03310 at 697.265 kb on + strand, within A4249_RS03310 at 697.266 kb on - strand, within A4249_RS03310 at 697.266 kb on - strand, within A4249_RS03310 at 697.266 kb on - strand, within A4249_RS03310 at 697.384 kb on + strand at 698.092 kb on + strand at 698.092 kb on + strand at 698.092 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.131 kb on - strand at 698.131 kb on - strand at 698.131 kb on - strand at 698.131 kb on - strand at 698.131 kb on - strand at 698.131 kb on - strand at 698.133 kb on + strand at 698.134 kb on - strand at 698.134 kb on - strand at 698.134 kb on - strand at 698.185 kb on + strand at 698.185 kb on + strand at 698.185 kb on + strand at 698.185 kb on + strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.186 kb on - strand at 698.189 kb on + strand at 698.189 kb on + strand at 698.190 kb on - strand at 698.190 kb on - strand at 698.190 kb on - strand at 698.218 kb on + strand at 698.219 kb on - strand at 698.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 695,989 + A4249_RS03300 0.18 +1.1 695,989 + A4249_RS03300 0.18 -1.7 695,990 - A4249_RS03300 0.18 +0.8 695,990 - A4249_RS03300 0.18 -0.4 696,312 + -0.2 696,313 - -0.3 696,313 - -1.1 696,353 + -0.6 696,353 + -1.0 696,353 + -0.7 696,353 + -0.1 696,354 - -0.4 696,354 - +0.3 696,354 - -0.3 696,703 + +0.9 696,703 + -0.4 696,703 + -0.8 696,703 + -1.5 696,704 - -0.0 696,704 - -0.7 696,723 - -0.2 696,723 - +0.5 696,723 - +0.9 696,723 - +0.5 696,723 - -0.8 696,742 + -0.8 696,742 + +0.3 696,742 + -0.4 696,743 - -0.0 696,750 + +1.7 697,150 + A4249_RS03310 0.61 -0.0 697,151 - A4249_RS03310 0.61 -0.5 697,151 - A4249_RS03310 0.61 -0.6 697,151 - A4249_RS03310 0.61 -0.8 697,190 + A4249_RS03310 0.68 -0.0 697,220 + A4249_RS03310 0.73 +0.3 697,220 + A4249_RS03310 0.73 +0.3 697,220 + A4249_RS03310 0.73 -1.5 697,220 + A4249_RS03310 0.73 -1.8 697,220 + A4249_RS03310 0.73 +0.1 697,220 + A4249_RS03310 0.73 -0.3 697,220 + A4249_RS03310 0.73 +0.3 697,220 + A4249_RS03310 0.73 -1.0 697,221 - A4249_RS03310 0.73 +0.1 697,221 - A4249_RS03310 0.73 +0.7 697,221 - A4249_RS03310 0.73 +0.7 697,221 - A4249_RS03310 0.73 -0.5 697,221 - A4249_RS03310 0.73 +0.3 697,221 - A4249_RS03310 0.73 -0.2 697,221 - A4249_RS03310 0.73 -1.8 697,265 + A4249_RS03310 0.81 +0.7 697,266 - A4249_RS03310 0.81 +0.2 697,266 - A4249_RS03310 0.81 -1.4 697,266 - A4249_RS03310 0.81 -1.9 697,384 + +1.1 698,092 + +0.7 698,092 + -2.3 698,092 + +1.1 698,123 + -0.0 698,123 + -0.1 698,123 + +0.3 698,123 + -0.1 698,124 - +0.4 698,124 - -0.2 698,124 - +0.1 698,130 + -0.5 698,130 + -0.9 698,130 + -1.1 698,130 + -0.2 698,130 + -0.1 698,130 + -0.1 698,131 - -0.4 698,131 - -0.7 698,131 - +0.3 698,131 - -0.5 698,131 - +0.1 698,131 - +0.1 698,133 + +0.9 698,134 - +0.1 698,134 - +0.4 698,134 - +0.2 698,185 + +0.6 698,185 + +1.2 698,185 + -0.3 698,185 + +0.3 698,186 - +0.8 698,186 - +0.7 698,186 - +0.2 698,186 - +0.5 698,186 - -0.9 698,186 - -0.4 698,186 - +0.1 698,186 - -0.1 698,186 - +0.4 698,189 + -0.1 698,189 + +1.3 698,190 - -0.0 698,190 - +2.1 698,190 - -0.2 698,218 + -0.2 698,219 - +0.1 698,219 - -0.6
Or see this region's nucleotide sequence