Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02055

Experiment: Guanosine 0.35306 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02050 and A4249_RS02055 are separated by 63 nucleotidesA4249_RS02055 and A4249_RS02060 overlap by 4 nucleotidesA4249_RS02060 and A4249_RS02065 are separated by 53 nucleotides A4249_RS02050: A4249_RS02050 - LacI family DNA-binding transcriptional regulator, at 424,827 to 425,840 _RS02050 A4249_RS02055: A4249_RS02055 - fumarylacetoacetate hydrolase family protein, at 425,904 to 427,052 _RS02055 A4249_RS02060: A4249_RS02060 - SDR family oxidoreductase, at 427,049 to 427,807 _RS02060 A4249_RS02065: A4249_RS02065 - sugar porter family MFS transporter, at 427,861 to 429,294 _RS02065 Position (kb) 425 426 427 428Strain fitness (log2 ratio) -2 -1 0 1 2at 424.906 kb on + strandat 424.986 kb on + strand, within A4249_RS02050at 424.986 kb on + strand, within A4249_RS02050at 424.986 kb on + strand, within A4249_RS02050at 424.986 kb on + strand, within A4249_RS02050at 425.049 kb on + strand, within A4249_RS02050at 425.049 kb on + strand, within A4249_RS02050at 425.070 kb on + strand, within A4249_RS02050at 425.070 kb on + strand, within A4249_RS02050at 425.071 kb on - strand, within A4249_RS02050at 425.071 kb on - strand, within A4249_RS02050at 425.284 kb on + strand, within A4249_RS02050at 425.284 kb on + strand, within A4249_RS02050at 425.284 kb on + strand, within A4249_RS02050at 425.284 kb on + strand, within A4249_RS02050at 425.284 kb on + strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.285 kb on - strand, within A4249_RS02050at 425.327 kb on - strand, within A4249_RS02050at 425.514 kb on + strand, within A4249_RS02050at 425.514 kb on + strand, within A4249_RS02050at 425.546 kb on - strand, within A4249_RS02050at 425.594 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.675 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.679 kb on + strand, within A4249_RS02050at 425.680 kb on - strand, within A4249_RS02050at 425.680 kb on - strand, within A4249_RS02050at 425.680 kb on - strand, within A4249_RS02050at 425.680 kb on - strand, within A4249_RS02050at 425.680 kb on - strand, within A4249_RS02050at 425.680 kb on - strand, within A4249_RS02050at 425.790 kb on - strandat 425.989 kb on + strandat 426.012 kb on + strandat 426.012 kb on + strandat 426.013 kb on - strandat 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.152 kb on - strand, within A4249_RS02055at 426.152 kb on - strand, within A4249_RS02055at 426.152 kb on - strand, within A4249_RS02055at 426.381 kb on + strand, within A4249_RS02055at 426.381 kb on + strand, within A4249_RS02055at 426.405 kb on + strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.517 kb on + strand, within A4249_RS02055at 426.517 kb on + strand, within A4249_RS02055at 426.517 kb on + strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.548 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.581 kb on - strand, within A4249_RS02055at 426.581 kb on - strand, within A4249_RS02055at 426.623 kb on + strand, within A4249_RS02055at 426.623 kb on + strand, within A4249_RS02055at 426.624 kb on - strand, within A4249_RS02055at 426.816 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.066 kb on + strandat 427.379 kb on + strand, within A4249_RS02060at 427.379 kb on + strand, within A4249_RS02060at 427.379 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.419 kb on - strand, within A4249_RS02060at 427.526 kb on + strand, within A4249_RS02060at 427.527 kb on - strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.781 kb on + strandat 427.781 kb on + strandat 427.781 kb on + strandat 427.782 kb on - strandat 427.782 kb on - strandat 427.805 kb on + strandat 427.806 kb on - strandat 427.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C)
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424,906 + +0.2
424,986 + A4249_RS02050 0.16 +0.3
424,986 + A4249_RS02050 0.16 -0.3
424,986 + A4249_RS02050 0.16 +0.4
424,986 + A4249_RS02050 0.16 +1.2
425,049 + A4249_RS02050 0.22 +0.8
425,049 + A4249_RS02050 0.22 +1.7
425,070 + A4249_RS02050 0.24 -0.5
425,070 + A4249_RS02050 0.24 +0.1
425,071 - A4249_RS02050 0.24 +0.4
425,071 - A4249_RS02050 0.24 +1.1
425,284 + A4249_RS02050 0.45 +0.2
425,284 + A4249_RS02050 0.45 -0.3
425,284 + A4249_RS02050 0.45 +0.3
425,284 + A4249_RS02050 0.45 +0.6
425,284 + A4249_RS02050 0.45 -2.6
425,285 - A4249_RS02050 0.45 +1.3
425,285 - A4249_RS02050 0.45 +0.6
425,285 - A4249_RS02050 0.45 +1.9
425,285 - A4249_RS02050 0.45 -0.3
425,285 - A4249_RS02050 0.45 +0.4
425,285 - A4249_RS02050 0.45 +0.0
425,285 - A4249_RS02050 0.45 -0.5
425,327 - A4249_RS02050 0.49 -0.1
425,514 + A4249_RS02050 0.68 -0.5
425,514 + A4249_RS02050 0.68 +0.4
425,546 - A4249_RS02050 0.71 +0.2
425,594 + A4249_RS02050 0.76 -0.8
425,675 + A4249_RS02050 0.84 +0.8
425,675 + A4249_RS02050 0.84 -0.0
425,675 + A4249_RS02050 0.84 -1.3
425,675 + A4249_RS02050 0.84 +0.8
425,675 + A4249_RS02050 0.84 +0.7
425,675 + A4249_RS02050 0.84 -0.3
425,675 + A4249_RS02050 0.84 -0.1
425,679 + A4249_RS02050 0.84 +0.2
425,679 + A4249_RS02050 0.84 -0.7
425,679 + A4249_RS02050 0.84 +0.1
425,679 + A4249_RS02050 0.84 +0.4
425,679 + A4249_RS02050 0.84 -0.1
425,679 + A4249_RS02050 0.84 -0.7
425,679 + A4249_RS02050 0.84 +0.1
425,679 + A4249_RS02050 0.84 -0.0
425,680 - A4249_RS02050 0.84 +1.6
425,680 - A4249_RS02050 0.84 +0.1
425,680 - A4249_RS02050 0.84 -0.2
425,680 - A4249_RS02050 0.84 -1.9
425,680 - A4249_RS02050 0.84 +1.7
425,680 - A4249_RS02050 0.84 -0.2
425,790 - +0.7
425,989 + +0.9
426,012 + -0.2
426,012 + +2.3
426,013 - +0.3
426,151 + A4249_RS02055 0.21 -0.2
426,151 + A4249_RS02055 0.21 +0.7
426,151 + A4249_RS02055 0.21 -0.1
426,151 + A4249_RS02055 0.21 -0.3
426,151 + A4249_RS02055 0.21 +0.3
426,152 - A4249_RS02055 0.22 +0.5
426,152 - A4249_RS02055 0.22 +0.1
426,152 - A4249_RS02055 0.22 +0.1
426,381 + A4249_RS02055 0.42 -0.0
426,381 + A4249_RS02055 0.42 +0.9
426,405 + A4249_RS02055 0.44 +1.3
426,406 - A4249_RS02055 0.44 +0.4
426,406 - A4249_RS02055 0.44 +1.1
426,406 - A4249_RS02055 0.44 +1.4
426,406 - A4249_RS02055 0.44 +1.1
426,517 + A4249_RS02055 0.53 -0.6
426,517 + A4249_RS02055 0.53 -0.3
426,517 + A4249_RS02055 0.53 -1.4
426,518 - A4249_RS02055 0.53 -0.2
426,518 - A4249_RS02055 0.53 -0.3
426,518 - A4249_RS02055 0.53 +0.7
426,518 - A4249_RS02055 0.53 -0.4
426,518 - A4249_RS02055 0.53 -2.1
426,518 - A4249_RS02055 0.53 -0.0
426,518 - A4249_RS02055 0.53 -0.0
426,548 + A4249_RS02055 0.56 +1.3
426,580 + A4249_RS02055 0.59 +1.5
426,580 + A4249_RS02055 0.59 +0.8
426,580 + A4249_RS02055 0.59 -0.1
426,580 + A4249_RS02055 0.59 +0.5
426,580 + A4249_RS02055 0.59 -0.3
426,580 + A4249_RS02055 0.59 +1.1
426,580 + A4249_RS02055 0.59 +0.5
426,580 + A4249_RS02055 0.59 +0.6
426,580 + A4249_RS02055 0.59 -0.5
426,581 - A4249_RS02055 0.59 -0.8
426,581 - A4249_RS02055 0.59 -0.9
426,623 + A4249_RS02055 0.63 -1.8
426,623 + A4249_RS02055 0.63 -0.2
426,624 - A4249_RS02055 0.63 -0.6
426,816 + A4249_RS02055 0.79 +1.3
426,837 + A4249_RS02055 0.81 -0.9
426,837 + A4249_RS02055 0.81 +0.3
426,837 + A4249_RS02055 0.81 +0.1
426,837 + A4249_RS02055 0.81 -0.6
426,837 + A4249_RS02055 0.81 -0.0
426,837 + A4249_RS02055 0.81 +0.1
426,838 - A4249_RS02055 0.81 -0.3
426,838 - A4249_RS02055 0.81 +0.2
426,838 - A4249_RS02055 0.81 -0.2
426,838 - A4249_RS02055 0.81 +0.0
426,838 - A4249_RS02055 0.81 -0.4
426,838 - A4249_RS02055 0.81 +0.4
426,838 - A4249_RS02055 0.81 +1.3
427,064 + -1.6
427,064 + -0.8
427,064 + +1.1
427,064 + -0.1
427,064 + -0.3
427,064 + +0.8
427,064 + +0.6
427,064 + +1.2
427,065 - -0.7
427,065 - +0.1
427,065 - -0.3
427,065 - -0.6
427,065 - -0.5
427,065 - +0.4
427,065 - +1.0
427,065 - +1.4
427,066 + -0.0
427,379 + A4249_RS02060 0.43 +0.9
427,379 + A4249_RS02060 0.43 +0.7
427,379 + A4249_RS02060 0.43 -0.4
427,418 + A4249_RS02060 0.49 +1.6
427,418 + A4249_RS02060 0.49 -1.4
427,418 + A4249_RS02060 0.49 +1.4
427,418 + A4249_RS02060 0.49 -1.4
427,418 + A4249_RS02060 0.49 +0.4
427,419 - A4249_RS02060 0.49 +0.0
427,526 + A4249_RS02060 0.63 -0.6
427,527 - A4249_RS02060 0.63 -0.4
427,652 + A4249_RS02060 0.79 +1.1
427,652 + A4249_RS02060 0.79 +1.4
427,652 + A4249_RS02060 0.79 +1.1
427,652 + A4249_RS02060 0.79 +1.7
427,653 - A4249_RS02060 0.80 +0.4
427,653 - A4249_RS02060 0.80 +0.1
427,653 - A4249_RS02060 0.80 -1.5
427,653 - A4249_RS02060 0.80 +0.1
427,781 + +0.5
427,781 + +0.9
427,781 + -0.5
427,782 - +0.3
427,782 - -1.0
427,805 + +0.4
427,806 - -0.7
427,976 - -0.4

Or see this region's nucleotide sequence