Experiment: Guanosine 0.35306 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01875 and A4249_RS01880 are separated by 440 nucleotides A4249_RS01880 and A4249_RS01885 are separated by 41 nucleotides A4249_RS01885 and A4249_RS01890 overlap by 4 nucleotides
A4249_RS01875: A4249_RS01875 - TrbI/VirB10 family protein, at 370,916 to 371,674
_RS01875
A4249_RS01880: A4249_RS01880 - TrbG/VirB9 family P-type conjugative transfer protein, at 372,115 to 372,756
_RS01880
A4249_RS01885: A4249_RS01885 - type IV secretion system protein, at 372,798 to 373,574
_RS01885
A4249_RS01890: A4249_RS01890 - type IV secretion system protein, at 373,571 to 374,806
_RS01890
Position (kb) 372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 371.304 kb on + strand, within A4249_RS01875 at 371.304 kb on + strand, within A4249_RS01875 at 371.333 kb on + strand, within A4249_RS01875 at 371.333 kb on + strand, within A4249_RS01875 at 371.333 kb on + strand, within A4249_RS01875 at 371.333 kb on + strand, within A4249_RS01875 at 371.334 kb on - strand, within A4249_RS01875 at 371.334 kb on - strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.335 kb on + strand, within A4249_RS01875 at 371.336 kb on - strand, within A4249_RS01875 at 371.336 kb on - strand, within A4249_RS01875 at 371.336 kb on - strand, within A4249_RS01875 at 371.336 kb on - strand, within A4249_RS01875 at 371.336 kb on - strand, within A4249_RS01875 at 371.689 kb on + strand at 371.689 kb on + strand at 371.690 kb on - strand at 371.690 kb on - strand at 371.690 kb on - strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.691 kb on + strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.692 kb on - strand at 371.710 kb on - strand at 371.710 kb on - strand at 371.751 kb on - strand at 371.834 kb on + strand at 371.883 kb on + strand at 371.883 kb on + strand at 371.883 kb on + strand at 371.883 kb on + strand at 371.883 kb on + strand at 371.883 kb on + strand at 371.884 kb on - strand at 371.884 kb on - strand at 371.884 kb on - strand at 371.884 kb on - strand at 371.884 kb on - strand at 371.972 kb on + strand at 371.973 kb on - strand at 372.011 kb on + strand at 372.011 kb on + strand at 372.011 kb on + strand at 372.012 kb on - strand at 372.012 kb on - strand at 372.206 kb on + strand, within A4249_RS01880 at 372.206 kb on + strand, within A4249_RS01880 at 372.206 kb on + strand, within A4249_RS01880 at 372.207 kb on - strand, within A4249_RS01880 at 372.207 kb on - strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.222 kb on + strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.223 kb on - strand, within A4249_RS01880 at 372.303 kb on + strand, within A4249_RS01880 at 372.304 kb on - strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.305 kb on + strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.306 kb on - strand, within A4249_RS01880 at 372.474 kb on + strand, within A4249_RS01880 at 372.474 kb on + strand, within A4249_RS01880 at 372.474 kb on + strand, within A4249_RS01880 at 372.474 kb on + strand, within A4249_RS01880 at 372.474 kb on + strand, within A4249_RS01880 at 372.474 kb on + strand, within A4249_RS01880 at 372.475 kb on - strand, within A4249_RS01880 at 372.475 kb on - strand, within A4249_RS01880 at 372.475 kb on - strand, within A4249_RS01880 at 372.476 kb on + strand, within A4249_RS01880 at 372.476 kb on + strand, within A4249_RS01880 at 372.476 kb on + strand, within A4249_RS01880 at 372.476 kb on + strand, within A4249_RS01880 at 372.476 kb on + strand, within A4249_RS01880 at 372.476 kb on + strand, within A4249_RS01880 at 372.477 kb on - strand, within A4249_RS01880 at 372.477 kb on - strand, within A4249_RS01880 at 372.477 kb on - strand, within A4249_RS01880 at 372.477 kb on - strand, within A4249_RS01880 at 372.504 kb on + strand, within A4249_RS01880 at 372.504 kb on + strand, within A4249_RS01880 at 372.505 kb on - strand, within A4249_RS01880 at 372.505 kb on - strand, within A4249_RS01880 at 372.505 kb on - strand, within A4249_RS01880 at 372.505 kb on - strand, within A4249_RS01880 at 372.505 kb on - strand, within A4249_RS01880 at 372.644 kb on + strand, within A4249_RS01880 at 372.644 kb on + strand, within A4249_RS01880 at 372.644 kb on + strand, within A4249_RS01880 at 372.645 kb on - strand, within A4249_RS01880 at 372.679 kb on - strand, within A4249_RS01880 at 372.686 kb on + strand, within A4249_RS01880 at 372.687 kb on - strand, within A4249_RS01880 at 372.788 kb on - strand at 372.788 kb on - strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.919 kb on + strand, within A4249_RS01885 at 372.919 kb on + strand, within A4249_RS01885 at 372.920 kb on - strand, within A4249_RS01885 at 372.991 kb on + strand, within A4249_RS01885 at 372.991 kb on + strand, within A4249_RS01885 at 373.135 kb on + strand, within A4249_RS01885 at 373.183 kb on + strand, within A4249_RS01885 at 373.184 kb on - strand, within A4249_RS01885 at 373.228 kb on + strand, within A4249_RS01885 at 373.228 kb on + strand, within A4249_RS01885 at 373.228 kb on + strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.276 kb on + strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.538 kb on - strand at 373.540 kb on + strand at 373.540 kb on + strand at 373.540 kb on + strand at 373.541 kb on - strand at 373.541 kb on - strand at 373.541 kb on - strand at 373.588 kb on + strand at 373.589 kb on - strand at 373.708 kb on + strand, within A4249_RS01890 at 373.708 kb on + strand, within A4249_RS01890 at 373.708 kb on + strand, within A4249_RS01890 at 373.724 kb on - strand, within A4249_RS01890 at 373.756 kb on + strand, within A4249_RS01890 at 373.756 kb on + strand, within A4249_RS01890 at 373.756 kb on + strand, within A4249_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction Guanosine 0.35306 mM (C) remove 371,304 + A4249_RS01875 0.51 +0.5 371,304 + A4249_RS01875 0.51 -0.1 371,333 + A4249_RS01875 0.55 +0.1 371,333 + A4249_RS01875 0.55 +0.5 371,333 + A4249_RS01875 0.55 -0.9 371,333 + A4249_RS01875 0.55 -0.8 371,334 - A4249_RS01875 0.55 +0.3 371,334 - A4249_RS01875 0.55 +1.8 371,335 + A4249_RS01875 0.55 -0.4 371,335 + A4249_RS01875 0.55 +0.0 371,335 + A4249_RS01875 0.55 -0.6 371,335 + A4249_RS01875 0.55 -0.7 371,335 + A4249_RS01875 0.55 -1.4 371,335 + A4249_RS01875 0.55 +0.4 371,335 + A4249_RS01875 0.55 +1.1 371,335 + A4249_RS01875 0.55 -0.7 371,335 + A4249_RS01875 0.55 +0.2 371,335 + A4249_RS01875 0.55 +0.1 371,336 - A4249_RS01875 0.55 +0.5 371,336 - A4249_RS01875 0.55 +0.8 371,336 - A4249_RS01875 0.55 -0.2 371,336 - A4249_RS01875 0.55 -0.8 371,336 - A4249_RS01875 0.55 -0.5 371,689 + -0.1 371,689 + -0.0 371,690 - -0.1 371,690 - -0.8 371,690 - +0.5 371,691 + +0.5 371,691 + -0.1 371,691 + +0.1 371,691 + +0.2 371,691 + -0.8 371,691 + -0.8 371,691 + +0.3 371,691 + -0.7 371,691 + -2.8 371,692 - -0.5 371,692 - +0.9 371,692 - -0.0 371,692 - -0.1 371,692 - -0.1 371,692 - +0.2 371,692 - -0.5 371,692 - +0.2 371,692 - -1.5 371,692 - -0.3 371,710 - -0.3 371,710 - +0.6 371,751 - -0.7 371,834 + -1.3 371,883 + +0.7 371,883 + +0.8 371,883 + -0.0 371,883 + +0.6 371,883 + -1.1 371,883 + -0.6 371,884 - +0.8 371,884 - -0.6 371,884 - -1.1 371,884 - -0.8 371,884 - -0.2 371,972 + -1.0 371,973 - -0.3 372,011 + -1.3 372,011 + -1.1 372,011 + +0.7 372,012 - +0.1 372,012 - +0.2 372,206 + A4249_RS01880 0.14 -0.2 372,206 + A4249_RS01880 0.14 +0.5 372,206 + A4249_RS01880 0.14 -0.6 372,207 - A4249_RS01880 0.14 +0.0 372,207 - A4249_RS01880 0.14 -0.0 372,222 + A4249_RS01880 0.17 +0.7 372,222 + A4249_RS01880 0.17 -1.4 372,222 + A4249_RS01880 0.17 -0.8 372,222 + A4249_RS01880 0.17 -0.6 372,222 + A4249_RS01880 0.17 +0.7 372,222 + A4249_RS01880 0.17 -0.9 372,222 + A4249_RS01880 0.17 +0.7 372,222 + A4249_RS01880 0.17 -1.0 372,222 + A4249_RS01880 0.17 -0.1 372,222 + A4249_RS01880 0.17 +0.2 372,222 + A4249_RS01880 0.17 -0.2 372,222 + A4249_RS01880 0.17 -0.2 372,223 - A4249_RS01880 0.17 +0.2 372,223 - A4249_RS01880 0.17 -0.4 372,223 - A4249_RS01880 0.17 +0.4 372,223 - A4249_RS01880 0.17 +0.5 372,223 - A4249_RS01880 0.17 +0.4 372,223 - A4249_RS01880 0.17 -0.5 372,223 - A4249_RS01880 0.17 +1.2 372,223 - A4249_RS01880 0.17 +0.5 372,223 - A4249_RS01880 0.17 -0.3 372,303 + A4249_RS01880 0.29 -0.6 372,304 - A4249_RS01880 0.29 +0.0 372,305 + A4249_RS01880 0.30 -0.2 372,305 + A4249_RS01880 0.30 +0.8 372,305 + A4249_RS01880 0.30 +0.1 372,305 + A4249_RS01880 0.30 -1.3 372,305 + A4249_RS01880 0.30 -0.3 372,305 + A4249_RS01880 0.30 -0.5 372,305 + A4249_RS01880 0.30 -0.4 372,305 + A4249_RS01880 0.30 -2.4 372,305 + A4249_RS01880 0.30 +0.4 372,305 + A4249_RS01880 0.30 -0.3 372,305 + A4249_RS01880 0.30 -0.1 372,305 + A4249_RS01880 0.30 +0.1 372,305 + A4249_RS01880 0.30 +0.5 372,305 + A4249_RS01880 0.30 +0.6 372,306 - A4249_RS01880 0.30 +0.6 372,306 - A4249_RS01880 0.30 +0.7 372,306 - A4249_RS01880 0.30 -0.8 372,306 - A4249_RS01880 0.30 +0.0 372,306 - A4249_RS01880 0.30 -1.6 372,306 - A4249_RS01880 0.30 +0.2 372,306 - A4249_RS01880 0.30 +0.6 372,306 - A4249_RS01880 0.30 -0.1 372,306 - A4249_RS01880 0.30 -0.1 372,306 - A4249_RS01880 0.30 -0.5 372,306 - A4249_RS01880 0.30 -0.5 372,306 - A4249_RS01880 0.30 +1.7 372,306 - A4249_RS01880 0.30 -0.3 372,306 - A4249_RS01880 0.30 +0.2 372,306 - A4249_RS01880 0.30 +0.6 372,306 - A4249_RS01880 0.30 -0.9 372,306 - A4249_RS01880 0.30 -0.1 372,306 - A4249_RS01880 0.30 -0.3 372,306 - A4249_RS01880 0.30 -0.4 372,474 + A4249_RS01880 0.56 -0.7 372,474 + A4249_RS01880 0.56 -0.4 372,474 + A4249_RS01880 0.56 -1.0 372,474 + A4249_RS01880 0.56 +0.6 372,474 + A4249_RS01880 0.56 +0.0 372,474 + A4249_RS01880 0.56 +0.1 372,475 - A4249_RS01880 0.56 -0.2 372,475 - A4249_RS01880 0.56 +0.5 372,475 - A4249_RS01880 0.56 -1.0 372,476 + A4249_RS01880 0.56 +0.1 372,476 + A4249_RS01880 0.56 -0.7 372,476 + A4249_RS01880 0.56 +1.2 372,476 + A4249_RS01880 0.56 +0.7 372,476 + A4249_RS01880 0.56 -0.1 372,476 + A4249_RS01880 0.56 -0.9 372,477 - A4249_RS01880 0.56 -0.3 372,477 - A4249_RS01880 0.56 +0.2 372,477 - A4249_RS01880 0.56 -0.6 372,477 - A4249_RS01880 0.56 -0.5 372,504 + A4249_RS01880 0.61 +0.4 372,504 + A4249_RS01880 0.61 +0.4 372,505 - A4249_RS01880 0.61 +0.2 372,505 - A4249_RS01880 0.61 -0.1 372,505 - A4249_RS01880 0.61 -1.5 372,505 - A4249_RS01880 0.61 +0.2 372,505 - A4249_RS01880 0.61 -0.9 372,644 + A4249_RS01880 0.82 +0.8 372,644 + A4249_RS01880 0.82 +0.7 372,644 + A4249_RS01880 0.82 +0.2 372,645 - A4249_RS01880 0.83 +0.3 372,679 - A4249_RS01880 0.88 +0.5 372,686 + A4249_RS01880 0.89 -0.5 372,687 - A4249_RS01880 0.89 +0.2 372,788 - -1.0 372,788 - +0.5 372,872 + -0.0 372,872 + +0.1 372,872 + +0.9 372,872 + -2.3 372,872 + +0.6 372,873 - -1.0 372,873 - +0.1 372,873 - +0.2 372,873 - -2.1 372,873 - -0.1 372,919 + A4249_RS01885 0.16 -0.2 372,919 + A4249_RS01885 0.16 -0.2 372,920 - A4249_RS01885 0.16 -0.3 372,991 + A4249_RS01885 0.25 -1.1 372,991 + A4249_RS01885 0.25 +0.3 373,135 + A4249_RS01885 0.43 -0.2 373,183 + A4249_RS01885 0.50 +0.1 373,184 - A4249_RS01885 0.50 -0.2 373,228 + A4249_RS01885 0.55 -0.3 373,228 + A4249_RS01885 0.55 -0.1 373,228 + A4249_RS01885 0.55 +0.9 373,229 - A4249_RS01885 0.55 -0.1 373,229 - A4249_RS01885 0.55 +0.1 373,229 - A4249_RS01885 0.55 -1.7 373,229 - A4249_RS01885 0.55 -1.1 373,229 - A4249_RS01885 0.55 -1.0 373,276 + A4249_RS01885 0.62 -1.4 373,277 - A4249_RS01885 0.62 -0.8 373,277 - A4249_RS01885 0.62 +0.3 373,277 - A4249_RS01885 0.62 -0.6 373,277 - A4249_RS01885 0.62 +0.4 373,277 - A4249_RS01885 0.62 -0.5 373,277 - A4249_RS01885 0.62 -0.5 373,384 + A4249_RS01885 0.75 -0.6 373,384 + A4249_RS01885 0.75 +0.7 373,384 + A4249_RS01885 0.75 +0.5 373,384 + A4249_RS01885 0.75 +0.3 373,538 - -0.2 373,540 + -0.4 373,540 + -0.2 373,540 + +1.1 373,541 - -1.1 373,541 - +0.1 373,541 - -0.5 373,588 + -0.7 373,589 - +0.3 373,708 + A4249_RS01890 0.11 +0.4 373,708 + A4249_RS01890 0.11 +0.4 373,708 + A4249_RS01890 0.11 +0.1 373,724 - A4249_RS01890 0.12 -2.2 373,756 + A4249_RS01890 0.15 -0.7 373,756 + A4249_RS01890 0.15 -0.9 373,756 + A4249_RS01890 0.15 -0.1
Or see this region's nucleotide sequence