Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28665
Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Glucose |
---|---|---|---|---|---|
remove | |||||
39,584 | + | -0.1 | |||
39,590 | + | -1.0 | |||
39,591 | - | +0.0 | |||
39,591 | - | +0.0 | |||
39,603 | + | +0.8 | |||
39,604 | - | -1.2 | |||
39,604 | - | -0.2 | |||
39,604 | - | -0.2 | |||
39,604 | - | +0.9 | |||
39,608 | - | -0.1 | |||
39,649 | - | -0.9 | |||
39,700 | - | NIAGMN_28660 | 0.16 | -2.9 | |
39,700 | - | NIAGMN_28660 | 0.16 | +0.2 | |
39,742 | - | NIAGMN_28660 | 0.27 | -0.7 | |
39,742 | - | NIAGMN_28660 | 0.27 | -0.4 | |
39,772 | + | NIAGMN_28660 | 0.35 | +1.4 | |
39,773 | - | NIAGMN_28660 | 0.35 | -0.2 | |
39,773 | - | NIAGMN_28660 | 0.35 | -0.7 | |
39,773 | - | NIAGMN_28660 | 0.35 | -1.7 | |
39,775 | - | NIAGMN_28660 | 0.35 | +0.4 | |
39,777 | - | NIAGMN_28660 | 0.36 | -0.3 | |
39,842 | - | NIAGMN_28660 | 0.53 | -0.1 | |
39,842 | - | NIAGMN_28660 | 0.53 | -1.0 | |
39,842 | - | NIAGMN_28660 | 0.53 | +0.1 | |
39,885 | + | NIAGMN_28660 | 0.64 | -1.2 | |
39,912 | + | NIAGMN_28660 | 0.71 | -0.6 | |
39,960 | + | NIAGMN_28660 | 0.83 | +0.5 | |
39,960 | + | NIAGMN_28660 | 0.83 | -0.1 | |
39,961 | - | NIAGMN_28660 | 0.83 | +0.2 | |
39,982 | + | NIAGMN_28660 | 0.88 | +0.4 | |
39,983 | - | NIAGMN_28660 | 0.89 | -0.6 | |
39,983 | - | NIAGMN_28660 | 0.89 | -0.2 | |
39,991 | - | -0.0 | |||
39,991 | - | -0.8 | |||
40,005 | + | +0.3 | |||
40,005 | + | -1.0 | |||
40,011 | + | +0.6 | |||
40,112 | - | +1.0 | |||
40,169 | + | +0.2 | |||
40,188 | - | +0.2 | |||
40,269 | + | +0.8 | |||
40,270 | - | -1.2 | |||
40,270 | - | -1.5 | |||
40,273 | + | +0.0 | |||
40,274 | - | -0.5 | |||
40,292 | - | katP | NIAGMN_28665 | 0.10 | +0.8 |
40,387 | + | katP | NIAGMN_28665 | 0.14 | -0.0 |
40,462 | + | katP | NIAGMN_28665 | 0.18 | -0.0 |
40,488 | - | katP | NIAGMN_28665 | 0.19 | +1.3 |
40,488 | - | katP | NIAGMN_28665 | 0.19 | -0.2 |
40,488 | - | katP | NIAGMN_28665 | 0.19 | -0.4 |
40,488 | - | katP | NIAGMN_28665 | 0.19 | -2.0 |
40,490 | - | katP | NIAGMN_28665 | 0.19 | +1.4 |
40,513 | - | katP | NIAGMN_28665 | 0.20 | +0.9 |
40,513 | - | katP | NIAGMN_28665 | 0.20 | -0.5 |
40,544 | + | katP | NIAGMN_28665 | 0.21 | -0.8 |
40,544 | + | katP | NIAGMN_28665 | 0.21 | +0.0 |
40,730 | + | katP | NIAGMN_28665 | 0.30 | +0.5 |
40,751 | + | katP | NIAGMN_28665 | 0.31 | +0.2 |
40,778 | - | katP | NIAGMN_28665 | 0.32 | +0.8 |
40,789 | + | katP | NIAGMN_28665 | 0.33 | -1.3 |
40,822 | + | katP | NIAGMN_28665 | 0.34 | +1.3 |
40,822 | + | katP | NIAGMN_28665 | 0.34 | +0.4 |
40,881 | - | katP | NIAGMN_28665 | 0.37 | -1.0 |
40,881 | - | katP | NIAGMN_28665 | 0.37 | -0.7 |
40,934 | - | katP | NIAGMN_28665 | 0.39 | +0.7 |
40,957 | + | katP | NIAGMN_28665 | 0.40 | -0.5 |
40,957 | + | katP | NIAGMN_28665 | 0.40 | -0.7 |
40,957 | + | katP | NIAGMN_28665 | 0.40 | -2.9 |
40,958 | - | katP | NIAGMN_28665 | 0.40 | -1.2 |
40,958 | - | katP | NIAGMN_28665 | 0.40 | +0.7 |
40,959 | + | katP | NIAGMN_28665 | 0.40 | -0.4 |
40,990 | + | katP | NIAGMN_28665 | 0.42 | -0.7 |
40,990 | + | katP | NIAGMN_28665 | 0.42 | -1.6 |
40,991 | - | katP | NIAGMN_28665 | 0.42 | +0.2 |
41,015 | - | katP | NIAGMN_28665 | 0.43 | -0.2 |
41,015 | - | katP | NIAGMN_28665 | 0.43 | +0.8 |
41,022 | + | katP | NIAGMN_28665 | 0.43 | -0.8 |
41,121 | - | katP | NIAGMN_28665 | 0.48 | -0.4 |
41,128 | + | katP | NIAGMN_28665 | 0.48 | +0.1 |
41,128 | + | katP | NIAGMN_28665 | 0.48 | +0.4 |
41,128 | + | katP | NIAGMN_28665 | 0.48 | +0.5 |
41,129 | - | katP | NIAGMN_28665 | 0.48 | -0.0 |
41,129 | - | katP | NIAGMN_28665 | 0.48 | +1.1 |
41,129 | - | katP | NIAGMN_28665 | 0.48 | -0.2 |
41,129 | - | katP | NIAGMN_28665 | 0.48 | +0.0 |
41,130 | + | katP | NIAGMN_28665 | 0.48 | +1.0 |
41,131 | - | katP | NIAGMN_28665 | 0.48 | +0.6 |
41,131 | - | katP | NIAGMN_28665 | 0.48 | -0.6 |
41,155 | + | katP | NIAGMN_28665 | 0.49 | +0.7 |
41,164 | + | katP | NIAGMN_28665 | 0.49 | -0.2 |
41,214 | - | katP | NIAGMN_28665 | 0.52 | +1.3 |
41,214 | - | katP | NIAGMN_28665 | 0.52 | -1.4 |
41,214 | - | katP | NIAGMN_28665 | 0.52 | +1.2 |
41,215 | + | katP | NIAGMN_28665 | 0.52 | +1.0 |
41,216 | - | katP | NIAGMN_28665 | 0.52 | -0.1 |
41,216 | - | katP | NIAGMN_28665 | 0.52 | +0.4 |
41,245 | - | katP | NIAGMN_28665 | 0.53 | -1.1 |
41,280 | + | katP | NIAGMN_28665 | 0.55 | +0.8 |
41,280 | + | katP | NIAGMN_28665 | 0.55 | -0.4 |
41,280 | + | katP | NIAGMN_28665 | 0.55 | -0.0 |
41,281 | - | katP | NIAGMN_28665 | 0.55 | -0.5 |
41,281 | - | katP | NIAGMN_28665 | 0.55 | +0.6 |
41,281 | - | katP | NIAGMN_28665 | 0.55 | -0.5 |
41,281 | - | katP | NIAGMN_28665 | 0.55 | -0.7 |
41,284 | + | katP | NIAGMN_28665 | 0.55 | -2.0 |
41,285 | - | katP | NIAGMN_28665 | 0.55 | -0.1 |
41,285 | - | katP | NIAGMN_28665 | 0.55 | -1.4 |
41,285 | - | katP | NIAGMN_28665 | 0.55 | +1.2 |
41,285 | - | katP | NIAGMN_28665 | 0.55 | +0.0 |
41,285 | - | katP | NIAGMN_28665 | 0.55 | +0.2 |
41,288 | + | katP | NIAGMN_28665 | 0.55 | -0.3 |
41,289 | - | katP | NIAGMN_28665 | 0.55 | +0.9 |
41,301 | + | katP | NIAGMN_28665 | 0.56 | +0.8 |
41,301 | + | katP | NIAGMN_28665 | 0.56 | +3.6 |
41,301 | + | katP | NIAGMN_28665 | 0.56 | +0.0 |
41,362 | + | katP | NIAGMN_28665 | 0.58 | -1.7 |
41,363 | - | katP | NIAGMN_28665 | 0.58 | -0.4 |
41,363 | - | katP | NIAGMN_28665 | 0.58 | +1.5 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | +0.3 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | -0.3 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | +1.2 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | +0.6 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | -0.1 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | +0.1 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | -0.8 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | +0.1 |
41,364 | + | katP | NIAGMN_28665 | 0.59 | +1.4 |
41,365 | - | katP | NIAGMN_28665 | 0.59 | -0.1 |
41,390 | - | katP | NIAGMN_28665 | 0.60 | -0.9 |
41,447 | - | katP | NIAGMN_28665 | 0.62 | +0.1 |
41,479 | + | katP | NIAGMN_28665 | 0.64 | +0.1 |
41,488 | + | katP | NIAGMN_28665 | 0.64 | -1.0 |
41,488 | + | katP | NIAGMN_28665 | 0.64 | -0.3 |
41,488 | + | katP | NIAGMN_28665 | 0.64 | -0.1 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | -1.0 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | +0.0 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | +1.3 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | -2.1 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | +0.9 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | +0.0 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | -0.5 |
41,489 | - | katP | NIAGMN_28665 | 0.64 | +2.0 |
41,536 | + | katP | NIAGMN_28665 | 0.66 | -0.8 |
41,536 | + | katP | NIAGMN_28665 | 0.66 | +0.3 |
41,536 | + | katP | NIAGMN_28665 | 0.66 | -0.8 |
41,536 | + | katP | NIAGMN_28665 | 0.66 | -0.5 |
41,536 | + | katP | NIAGMN_28665 | 0.66 | -0.3 |
41,536 | + | katP | NIAGMN_28665 | 0.66 | +2.0 |
41,537 | - | katP | NIAGMN_28665 | 0.66 | -1.8 |
41,537 | - | katP | NIAGMN_28665 | 0.66 | +0.2 |
41,537 | - | katP | NIAGMN_28665 | 0.66 | -0.2 |
41,557 | + | katP | NIAGMN_28665 | 0.67 | +2.0 |
41,557 | + | katP | NIAGMN_28665 | 0.67 | -0.3 |
41,613 | + | katP | NIAGMN_28665 | 0.70 | -0.9 |
41,613 | + | katP | NIAGMN_28665 | 0.70 | -0.2 |
41,613 | + | katP | NIAGMN_28665 | 0.70 | -0.6 |
41,613 | + | katP | NIAGMN_28665 | 0.70 | +1.0 |
41,613 | + | katP | NIAGMN_28665 | 0.70 | +1.1 |
41,613 | + | katP | NIAGMN_28665 | 0.70 | +0.1 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | -0.1 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | +0.8 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | -0.8 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | +0.5 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | +0.7 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | +0.7 |
41,614 | - | katP | NIAGMN_28665 | 0.70 | -1.1 |
41,617 | + | katP | NIAGMN_28665 | 0.70 | +0.7 |
41,617 | + | katP | NIAGMN_28665 | 0.70 | +0.4 |
41,617 | + | katP | NIAGMN_28665 | 0.70 | +1.0 |
41,617 | + | katP | NIAGMN_28665 | 0.70 | -2.9 |
41,617 | + | katP | NIAGMN_28665 | 0.70 | -0.1 |
41,618 | - | katP | NIAGMN_28665 | 0.70 | -0.2 |
41,618 | - | katP | NIAGMN_28665 | 0.70 | +0.8 |
41,618 | - | katP | NIAGMN_28665 | 0.70 | +0.6 |
41,618 | - | katP | NIAGMN_28665 | 0.70 | +1.6 |
41,618 | - | katP | NIAGMN_28665 | 0.70 | +0.4 |
41,618 | - | katP | NIAGMN_28665 | 0.70 | +0.1 |
41,706 | + | katP | NIAGMN_28665 | 0.74 | -1.1 |
41,706 | + | katP | NIAGMN_28665 | 0.74 | -0.1 |
41,706 | + | katP | NIAGMN_28665 | 0.74 | +0.9 |
41,707 | - | katP | NIAGMN_28665 | 0.74 | -1.5 |
41,707 | - | katP | NIAGMN_28665 | 0.74 | +1.3 |
41,707 | - | katP | NIAGMN_28665 | 0.74 | +0.3 |
41,707 | - | katP | NIAGMN_28665 | 0.74 | +0.2 |
41,708 | + | katP | NIAGMN_28665 | 0.74 | +0.9 |
41,708 | + | katP | NIAGMN_28665 | 0.74 | -0.5 |
41,708 | + | katP | NIAGMN_28665 | 0.74 | -1.8 |
41,709 | - | katP | NIAGMN_28665 | 0.74 | -0.8 |
41,709 | - | katP | NIAGMN_28665 | 0.74 | +1.3 |
41,709 | - | katP | NIAGMN_28665 | 0.74 | +2.7 |
41,709 | - | katP | NIAGMN_28665 | 0.74 | +1.2 |
41,709 | - | katP | NIAGMN_28665 | 0.74 | +0.5 |
41,761 | + | katP | NIAGMN_28665 | 0.76 | +2.0 |
41,762 | - | katP | NIAGMN_28665 | 0.77 | -1.1 |
41,762 | - | katP | NIAGMN_28665 | 0.77 | -1.9 |
41,762 | - | katP | NIAGMN_28665 | 0.77 | -0.7 |
41,822 | - | katP | NIAGMN_28665 | 0.79 | +0.4 |
41,879 | - | katP | NIAGMN_28665 | 0.82 | +0.6 |
41,879 | - | katP | NIAGMN_28665 | 0.82 | -1.1 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.7 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.0 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.4 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | -0.6 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +1.0 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.6 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.3 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.1 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | -0.6 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | -0.6 |
41,949 | + | katP | NIAGMN_28665 | 0.85 | +0.2 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +0.6 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +0.6 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +1.0 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +1.0 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | -0.2 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +0.2 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | -1.3 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +0.9 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | -0.7 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +0.6 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +1.7 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +2.9 |
41,950 | - | katP | NIAGMN_28665 | 0.85 | +0.4 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | +0.5 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | -0.1 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | +0.0 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | +1.6 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | +0.4 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | +0.7 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | -0.4 |
41,958 | + | katP | NIAGMN_28665 | 0.85 | +2.0 |
41,959 | - | katP | NIAGMN_28665 | 0.85 | -0.2 |
41,959 | - | katP | NIAGMN_28665 | 0.85 | -0.8 |
41,959 | - | katP | NIAGMN_28665 | 0.85 | -1.7 |
41,959 | - | katP | NIAGMN_28665 | 0.85 | +0.2 |
41,984 | - | katP | NIAGMN_28665 | 0.87 | +1.5 |
41,984 | - | katP | NIAGMN_28665 | 0.87 | +0.6 |
42,004 | - | katP | NIAGMN_28665 | 0.87 | +0.1 |
42,012 | + | katP | NIAGMN_28665 | 0.88 | -0.7 |
42,105 | + | +0.8 | |||
42,146 | + | -0.5 | |||
42,161 | + | -0.5 | |||
42,161 | + | -0.3 | |||
42,162 | - | +0.2 | |||
42,184 | - | +0.6 | |||
42,206 | - | +0.2 | |||
42,215 | + | +2.4 | |||
42,216 | - | +1.2 | |||
42,223 | + | +0.6 | |||
42,280 | + | -0.1 | |||
42,280 | + | +0.4 | |||
42,280 | + | -1.6 | |||
42,281 | - | -0.3 | |||
42,286 | + | -0.0 | |||
42,286 | + | -2.2 | |||
42,286 | + | -0.1 | |||
42,287 | - | +2.4 | |||
42,287 | - | -0.6 | |||
42,317 | + | +0.1 | |||
42,319 | + | -1.7 | |||
42,350 | + | -0.6 | |||
42,352 | + | -1.0 | |||
42,352 | + | +0.3 | |||
42,352 | + | +1.0 | |||
42,353 | - | -0.4 | |||
42,353 | - | -0.8 | |||
42,353 | - | +0.6 | |||
42,356 | + | -0.1 | |||
42,356 | + | -1.5 | |||
42,357 | - | +0.8 | |||
42,367 | + | -0.1 | |||
42,372 | - | +1.1 | |||
42,387 | + | +0.0 | |||
42,390 | + | +0.5 | |||
42,391 | - | -0.1 | |||
42,391 | - | -0.0 | |||
42,444 | + | +0.9 | |||
42,495 | - | -0.2 | |||
42,495 | - | -0.7 | |||
42,495 | - | -2.2 | |||
42,525 | - | -0.1 | |||
42,586 | + | +0.8 | |||
42,586 | + | -0.3 | |||
42,586 | + | +0.6 | |||
42,586 | + | -1.1 | |||
42,586 | + | +1.2 | |||
42,587 | - | +0.4 | |||
42,587 | - | -0.6 | |||
42,587 | - | +0.5 | |||
42,587 | - | +2.4 | |||
42,587 | - | -0.2 | |||
42,783 | + | +0.2 | |||
42,784 | - | -1.1 | |||
42,784 | - | +1.2 | |||
42,823 | + | -0.3 | |||
42,823 | + | -2.3 | |||
42,823 | + | -0.2 | |||
42,824 | - | -1.6 | |||
42,895 | + | -0.3 | |||
42,896 | - | +0.1 | |||
42,900 | + | +0.2 | |||
42,938 | + | -0.2 | |||
42,938 | + | +1.1 | |||
42,938 | + | -0.8 | |||
42,938 | + | -0.6 | |||
42,938 | + | +1.5 | |||
42,939 | - | -1.4 | |||
42,939 | - | -1.3 | |||
42,963 | + | -0.4 | |||
42,964 | - | +1.6 | |||
43,031 | - | +0.4 | |||
43,031 | - | -0.5 |
Or see this region's nucleotide sequence