Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26555

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycjM and NIAGMN_26555 overlap by 1 nucleotidesNIAGMN_26555 and pspE are separated by 209 nucleotidespspE and pspD are separated by 74 nucleotidespspD and pspC are separated by 8 nucleotides NIAGMN_26550: ycjM - Glucosylglycerate phosphorylase, at 5,166,801 to 5,168,105 ycjM NIAGMN_26555: NIAGMN_26555 - Alpha-amylase, at 5,168,105 to 5,168,479 _26555 NIAGMN_26560: pspE - thiosulfate sulfurtransferase PspE, at 5,168,689 to 5,169,003 pspE NIAGMN_26565: pspD - phage shock protein PspD, at 5,169,078 to 5,169,299 pspD NIAGMN_26570: pspC - envelope stress response membrane protein PspC, at 5,169,308 to 5,169,667 pspC Position (kb) 5168 5169Strain fitness (log2 ratio) -1 0 1at 5168.877 kb on + strand, within pspEat 5169.437 kb on + strand, within pspC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,168,877 + pspE NIAGMN_26560 0.60 -0.0
5,169,437 + pspC NIAGMN_26570 0.36 -0.2

Or see this region's nucleotide sequence