Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26335

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdbpA and ynaL are separated by 32 nucleotidesynaL and zntB are separated by 274 nucleotides NIAGMN_26330: dbpA - ATP-dependent RNA helicase DbpA, at 5,126,155 to 5,127,528 dbpA NIAGMN_26335: ynaL - Protein YnaL, at 5,127,561 to 5,127,731 ynaL NIAGMN_26345: zntB - zinc transporter ZntB, at 5,128,006 to 5,128,989 zntB Position (kb) 5127 5128Strain fitness (log2 ratio) -2 -1 0 1at 5126.607 kb on + strand, within dbpAat 5126.782 kb on - strand, within dbpAat 5126.822 kb on - strand, within dbpAat 5127.084 kb on + strand, within dbpAat 5127.458 kb on - strandat 5127.534 kb on - strandat 5127.731 kb on + strandat 5127.870 kb on - strandat 5127.870 kb on - strandat 5128.132 kb on + strand, within zntBat 5128.257 kb on + strand, within zntBat 5128.409 kb on - strand, within zntBat 5128.664 kb on - strand, within zntB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,126,607 + dbpA NIAGMN_26330 0.33 -0.6
5,126,782 - dbpA NIAGMN_26330 0.46 -1.3
5,126,822 - dbpA NIAGMN_26330 0.49 +0.9
5,127,084 + dbpA NIAGMN_26330 0.68 -1.4
5,127,458 - -1.6
5,127,534 - -2.0
5,127,731 + -0.4
5,127,870 - -0.9
5,127,870 - -0.3
5,128,132 + zntB NIAGMN_26345 0.13 -0.2
5,128,257 + zntB NIAGMN_26345 0.26 -1.8
5,128,409 - zntB NIAGMN_26345 0.41 -0.4
5,128,664 - zntB NIAGMN_26345 0.67 +0.7

Or see this region's nucleotide sequence