Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dppD and ddpF overlap by 8 nucleotides ddpF and osmC are separated by 55 nucleotides osmC and bdm are separated by 344 nucleotides bdm and sra are separated by 101 nucleotides sra and maeA are separated by 156 nucleotides
NIAGMN_25465: dppD - ABC transporter ATP-binding protein, at 4,965,641 to 4,966,627
dppD
NIAGMN_25470: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 4,966,620 to 4,967,546
ddpF
NIAGMN_25475: osmC - peroxiredoxin OsmC, at 4,967,602 to 4,968,033
osmC
NIAGMN_25480: bdm - biofilm-dependent modulation protein, at 4,968,378 to 4,968,593
bdm
NIAGMN_25485: sra - stationary-phase-induced ribosome-associated protein, at 4,968,695 to 4,968,832
sra
NIAGMN_25490: maeA - malate dehydrogenase, at 4,968,989 to 4,970,686
maeA
Position (kb)
4967
4968
4969 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4966.617 kb on + strand at 4966.656 kb on - strand at 4966.656 kb on - strand at 4966.863 kb on - strand, within ddpF at 4966.949 kb on + strand, within ddpF at 4966.949 kb on + strand, within ddpF at 4966.959 kb on - strand, within ddpF at 4967.269 kb on - strand, within ddpF at 4967.332 kb on - strand, within ddpF at 4967.644 kb on + strand at 4968.066 kb on - strand at 4968.073 kb on - strand at 4968.383 kb on + strand at 4968.384 kb on - strand at 4968.561 kb on + strand, within bdm at 4968.618 kb on - strand at 4968.671 kb on + strand at 4968.721 kb on + strand, within sra at 4968.792 kb on + strand, within sra at 4969.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,966,617 + -2.2 4,966,656 - +1.2 4,966,656 - -0.5 4,966,863 - ddpF NIAGMN_25470 0.26 -0.1 4,966,949 + ddpF NIAGMN_25470 0.35 +0.7 4,966,949 + ddpF NIAGMN_25470 0.35 -1.1 4,966,959 - ddpF NIAGMN_25470 0.37 -0.6 4,967,269 - ddpF NIAGMN_25470 0.70 +0.3 4,967,332 - ddpF NIAGMN_25470 0.77 -2.0 4,967,644 + +1.5 4,968,066 - +2.0 4,968,073 - -0.1 4,968,383 + -0.0 4,968,384 - -0.6 4,968,561 + bdm NIAGMN_25480 0.85 +1.0 4,968,618 - -0.4 4,968,671 + -0.1 4,968,721 + sra NIAGMN_25485 0.19 -1.7 4,968,792 + sra NIAGMN_25485 0.70 +0.4 4,969,023 - +0.4
Or see this region's nucleotide sequence