Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25325

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlsrR and lsrK are separated by 78 nucleotideslsrK and NIAGMN_25330 are separated by 530 nucleotides NIAGMN_25320: lsrR - transcriptional regulator LsrR, at 4,920,738 to 4,921,691 lsrR NIAGMN_25325: lsrK - autoinducer-2 kinase, at 4,921,770 to 4,923,362 lsrK NIAGMN_25330: NIAGMN_25330 - ECSE_1600 family autotransporter, at 4,923,893 to 4,927,924 _25330 Position (kb) 4921 4922 4923 4924Strain fitness (log2 ratio) -1 0 1at 4920.970 kb on + strand, within lsrRat 4921.635 kb on + strandat 4921.637 kb on + strandat 4922.066 kb on + strand, within lsrKat 4922.156 kb on + strand, within lsrKat 4923.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,920,970 + lsrR NIAGMN_25320 0.24 +1.0
4,921,635 + +0.3
4,921,637 + +0.3
4,922,066 + lsrK NIAGMN_25325 0.19 +0.3
4,922,156 + lsrK NIAGMN_25325 0.24 +0.3
4,923,974 - +0.8

Or see this region's nucleotide sequence