Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25245

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeA and yneK are separated by 150 nucleotidesyneK and yneK are separated by 78 nucleotidesyneK and yneJ are separated by 77 nucleotides NIAGMN_25235: ydeA - L-arabinose MFS transporter, at 4,903,272 to 4,904,462 ydeA NIAGMN_25240: yneK - putative protein YneK, at 4,904,613 to 4,904,861 yneK NIAGMN_25245: yneK - putative protein YneK, at 4,904,940 to 4,905,728 yneK NIAGMN_25250: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 4,905,806 to 4,906,687 yneJ Position (kb) 4904 4905 4906Strain fitness (log2 ratio) -1 0 1at 4904.007 kb on + strand, within ydeAat 4904.007 kb on + strand, within ydeAat 4904.011 kb on - strand, within ydeAat 4904.293 kb on + strand, within ydeAat 4905.977 kb on - strand, within yneJat 4906.237 kb on + strand, within yneJat 4906.489 kb on - strand, within yneJat 4906.518 kb on - strand, within yneJat 4906.553 kb on + strand, within yneJat 4906.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,904,007 + ydeA NIAGMN_25235 0.62 -0.4
4,904,007 + ydeA NIAGMN_25235 0.62 +0.7
4,904,011 - ydeA NIAGMN_25235 0.62 +0.5
4,904,293 + ydeA NIAGMN_25235 0.86 -1.3
4,905,977 - yneJ NIAGMN_25250 0.19 +0.0
4,906,237 + yneJ NIAGMN_25250 0.49 +1.1
4,906,489 - yneJ NIAGMN_25250 0.77 +0.3
4,906,518 - yneJ NIAGMN_25250 0.81 +0.9
4,906,553 + yneJ NIAGMN_25250 0.85 -0.2
4,906,708 - +0.3

Or see this region's nucleotide sequence