Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24205

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgK and flgL are separated by 11 nucleotidesflgL and rne are separated by 194 nucleotides NIAGMN_24200: flgK - flagellar hook-associated protein FlgK, at 4,731,227 to 4,732,870 flgK NIAGMN_24205: flgL - flagellar hook-associated protein FlgL, at 4,732,882 to 4,733,835 flgL NIAGMN_24210: rne - ribonuclease E, at 4,734,030 to 4,737,215 rne Position (kb) 4732 4733 4734Strain fitness (log2 ratio) -3 -2 -1 0 1at 4731.902 kb on - strand, within flgKat 4732.331 kb on - strand, within flgKat 4732.500 kb on + strand, within flgKat 4732.500 kb on + strand, within flgKat 4732.500 kb on + strand, within flgKat 4732.501 kb on - strand, within flgKat 4732.604 kb on - strand, within flgKat 4732.803 kb on - strandat 4733.118 kb on - strand, within flgLat 4733.669 kb on + strand, within flgLat 4733.739 kb on + strand, within flgLat 4733.833 kb on + strandat 4733.851 kb on + strandat 4733.866 kb on + strandat 4733.866 kb on + strandat 4733.962 kb on + strandat 4734.015 kb on + strandat 4734.015 kb on + strandat 4734.024 kb on + strandat 4734.025 kb on - strandat 4734.025 kb on - strandat 4734.028 kb on + strandat 4734.028 kb on + strandat 4734.029 kb on - strandat 4734.029 kb on - strandat 4734.029 kb on - strandat 4734.032 kb on - strandat 4734.105 kb on - strandat 4734.122 kb on + strandat 4734.164 kb on - strandat 4734.654 kb on + strand, within rneat 4734.655 kb on - strand, within rneat 4734.655 kb on - strand, within rneat 4734.655 kb on - strand, within rne

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,731,902 - flgK NIAGMN_24200 0.41 -0.5
4,732,331 - flgK NIAGMN_24200 0.67 +0.4
4,732,500 + flgK NIAGMN_24200 0.77 -0.0
4,732,500 + flgK NIAGMN_24200 0.77 -1.6
4,732,500 + flgK NIAGMN_24200 0.77 +0.2
4,732,501 - flgK NIAGMN_24200 0.77 -0.1
4,732,604 - flgK NIAGMN_24200 0.84 +0.8
4,732,803 - -0.3
4,733,118 - flgL NIAGMN_24205 0.25 -0.0
4,733,669 + flgL NIAGMN_24205 0.82 -1.5
4,733,739 + flgL NIAGMN_24205 0.90 +1.2
4,733,833 + +1.3
4,733,851 + +1.5
4,733,866 + -0.8
4,733,866 + +0.9
4,733,962 + +1.2
4,734,015 + -2.7
4,734,015 + +0.9
4,734,024 + -0.5
4,734,025 - -0.6
4,734,025 - -0.6
4,734,028 + -1.9
4,734,028 + -0.2
4,734,029 - +0.3
4,734,029 - -2.2
4,734,029 - +0.1
4,734,032 - -0.1
4,734,105 - -1.9
4,734,122 + -1.9
4,734,164 - -0.9
4,734,654 + rne NIAGMN_24210 0.20 -3.6
4,734,655 - rne NIAGMN_24210 0.20 -1.2
4,734,655 - rne NIAGMN_24210 0.20 +0.9
4,734,655 - rne NIAGMN_24210 0.20 -0.1

Or see this region's nucleotide sequence