Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiM and NIAGMN_22020 overlap by 4 nucleotides NIAGMN_22020 and yegX are separated by 64 nucleotides yegX and yegW are separated by 51 nucleotides
NIAGMN_22015: thiM - hydroxyethylthiazole kinase, at 4,341,539 to 4,342,327
thiM
NIAGMN_22020: NIAGMN_22020 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 4,342,324 to 4,343,124
_22020
NIAGMN_22025: yegX - Uncharacterized protein YegX, at 4,343,189 to 4,344,007
yegX
NIAGMN_22030: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 4,344,059 to 4,344,805
yegW
Position (kb) 4342
4343
4344 Strain fitness (log2 ratio) -2
-1
0
1 at 4341.449 kb on + strand at 4341.449 kb on + strand at 4341.538 kb on + strand at 4341.538 kb on + strand at 4341.538 kb on + strand at 4341.538 kb on + strand at 4341.582 kb on + strand at 4341.583 kb on - strand at 4341.655 kb on + strand, within thiM at 4342.064 kb on + strand, within thiM at 4342.064 kb on + strand, within thiM at 4342.434 kb on + strand, within NIAGMN_22020 at 4342.434 kb on + strand, within NIAGMN_22020 at 4342.434 kb on + strand, within NIAGMN_22020 at 4342.437 kb on + strand, within NIAGMN_22020 at 4342.697 kb on + strand, within NIAGMN_22020 at 4342.709 kb on + strand, within NIAGMN_22020 at 4342.727 kb on + strand, within NIAGMN_22020 at 4342.730 kb on + strand, within NIAGMN_22020 at 4342.844 kb on + strand, within NIAGMN_22020 at 4342.962 kb on + strand, within NIAGMN_22020 at 4343.021 kb on + strand, within NIAGMN_22020 at 4343.132 kb on - strand at 4343.132 kb on - strand at 4343.134 kb on + strand at 4343.134 kb on + strand at 4343.134 kb on + strand at 4343.134 kb on + strand at 4343.134 kb on + strand at 4343.136 kb on + strand at 4343.136 kb on + strand at 4343.136 kb on + strand at 4343.233 kb on - strand at 4343.321 kb on + strand, within yegX at 4343.322 kb on - strand, within yegX at 4343.322 kb on - strand, within yegX at 4343.333 kb on + strand, within yegX at 4343.333 kb on + strand, within yegX at 4343.334 kb on - strand, within yegX at 4343.381 kb on + strand, within yegX at 4343.397 kb on + strand, within yegX at 4343.397 kb on + strand, within yegX at 4343.397 kb on + strand, within yegX at 4343.530 kb on + strand, within yegX at 4343.541 kb on + strand, within yegX at 4343.542 kb on - strand, within yegX at 4343.673 kb on + strand, within yegX at 4343.767 kb on + strand, within yegX at 4343.811 kb on - strand, within yegX at 4343.843 kb on + strand, within yegX at 4343.843 kb on + strand, within yegX at 4343.844 kb on - strand, within yegX at 4343.844 kb on - strand, within yegX at 4343.913 kb on + strand, within yegX at 4344.005 kb on + strand at 4344.022 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,341,449 + +0.4 4,341,449 + -0.4 4,341,538 + -0.3 4,341,538 + -0.2 4,341,538 + -0.7 4,341,538 + -0.3 4,341,582 + -0.9 4,341,583 - -0.3 4,341,655 + thiM NIAGMN_22015 0.15 -1.9 4,342,064 + thiM NIAGMN_22015 0.67 +0.4 4,342,064 + thiM NIAGMN_22015 0.67 +0.5 4,342,434 + NIAGMN_22020 0.14 -0.8 4,342,434 + NIAGMN_22020 0.14 -1.8 4,342,434 + NIAGMN_22020 0.14 -0.8 4,342,437 + NIAGMN_22020 0.14 -1.8 4,342,697 + NIAGMN_22020 0.47 -0.4 4,342,709 + NIAGMN_22020 0.48 -0.8 4,342,727 + NIAGMN_22020 0.50 -1.2 4,342,730 + NIAGMN_22020 0.51 +0.4 4,342,844 + NIAGMN_22020 0.65 -0.3 4,342,962 + NIAGMN_22020 0.80 -1.3 4,343,021 + NIAGMN_22020 0.87 -0.1 4,343,132 - +0.4 4,343,132 - +1.7 4,343,134 + -0.1 4,343,134 + +0.4 4,343,134 + -0.2 4,343,134 + +0.5 4,343,134 + +0.5 4,343,136 + -0.1 4,343,136 + -0.3 4,343,136 + -0.8 4,343,233 - -0.8 4,343,321 + yegX NIAGMN_22025 0.16 -0.7 4,343,322 - yegX NIAGMN_22025 0.16 -0.1 4,343,322 - yegX NIAGMN_22025 0.16 +0.3 4,343,333 + yegX NIAGMN_22025 0.18 +0.9 4,343,333 + yegX NIAGMN_22025 0.18 -1.0 4,343,334 - yegX NIAGMN_22025 0.18 -0.9 4,343,381 + yegX NIAGMN_22025 0.23 -0.1 4,343,397 + yegX NIAGMN_22025 0.25 +0.8 4,343,397 + yegX NIAGMN_22025 0.25 -0.8 4,343,397 + yegX NIAGMN_22025 0.25 +0.2 4,343,530 + yegX NIAGMN_22025 0.42 -0.7 4,343,541 + yegX NIAGMN_22025 0.43 -2.0 4,343,542 - yegX NIAGMN_22025 0.43 +0.4 4,343,673 + yegX NIAGMN_22025 0.59 +0.0 4,343,767 + yegX NIAGMN_22025 0.71 -0.5 4,343,811 - yegX NIAGMN_22025 0.76 -0.6 4,343,843 + yegX NIAGMN_22025 0.80 -0.6 4,343,843 + yegX NIAGMN_22025 0.80 -0.1 4,343,844 - yegX NIAGMN_22025 0.80 +0.1 4,343,844 - yegX NIAGMN_22025 0.80 +1.5 4,343,913 + yegX NIAGMN_22025 0.88 +1.3 4,344,005 + +0.7 4,344,022 + +1.0
Or see this region's nucleotide sequence