Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17035

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyggR and ruvX are separated by 190 nucleotidesruvX and yqgE overlap by 1 nucleotidesyqgE and gshB are separated by 39 nucleotidesgshB and rsmE are separated by 12 nucleotides NIAGMN_17025: yggR - Uncharacterized protein YggR, at 3,365,144 to 3,366,124 yggR NIAGMN_17030: ruvX - Holliday junction resolvase RuvX, at 3,366,315 to 3,366,731 ruvX NIAGMN_17035: yqgE - YqgE/AlgH family protein, at 3,366,731 to 3,367,366 yqgE NIAGMN_17040: gshB - glutathione synthase, at 3,367,406 to 3,368,353 gshB NIAGMN_17045: rsmE - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 3,368,366 to 3,369,097 rsmE Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -2 -1 0 1at 3365.817 kb on + strand, within yggRat 3365.817 kb on + strand, within yggRat 3365.817 kb on + strand, within yggRat 3365.818 kb on - strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.821 kb on + strand, within yggRat 3365.822 kb on - strand, within yggRat 3365.822 kb on - strand, within yggRat 3365.822 kb on - strand, within yggRat 3365.822 kb on - strand, within yggRat 3365.822 kb on - strand, within yggRat 3365.908 kb on + strand, within yggRat 3366.046 kb on + strandat 3366.076 kb on - strandat 3366.093 kb on - strandat 3366.093 kb on - strandat 3366.159 kb on + strandat 3366.171 kb on - strandat 3366.208 kb on + strandat 3366.208 kb on + strandat 3366.208 kb on + strandat 3366.269 kb on - strandat 3366.281 kb on + strandat 3366.284 kb on + strandat 3366.284 kb on + strandat 3366.284 kb on + strandat 3366.285 kb on - strandat 3366.285 kb on - strandat 3366.285 kb on - strandat 3366.288 kb on + strandat 3366.288 kb on + strandat 3366.289 kb on - strandat 3366.316 kb on + strandat 3366.317 kb on - strandat 3366.317 kb on - strandat 3367.205 kb on - strand, within yqgEat 3367.205 kb on - strand, within yqgEat 3367.208 kb on - strand, within yqgEat 3367.208 kb on - strand, within yqgEat 3367.208 kb on - strand, within yqgEat 3367.208 kb on - strand, within yqgEat 3367.208 kb on - strand, within yqgEat 3367.222 kb on - strand, within yqgEat 3367.271 kb on - strand, within yqgEat 3367.271 kb on - strand, within yqgEat 3367.287 kb on - strand, within yqgEat 3367.341 kb on - strandat 3367.407 kb on + strandat 3367.407 kb on + strandat 3367.407 kb on + strandat 3367.407 kb on + strandat 3367.408 kb on - strandat 3367.408 kb on - strandat 3367.408 kb on - strandat 3367.408 kb on - strandat 3367.416 kb on - strandat 3367.440 kb on - strandat 3367.486 kb on + strandat 3367.487 kb on - strandat 3367.507 kb on + strand, within gshBat 3367.507 kb on + strand, within gshBat 3367.508 kb on - strand, within gshBat 3367.508 kb on - strand, within gshBat 3367.925 kb on - strand, within gshBat 3367.925 kb on - strand, within gshBat 3368.054 kb on - strand, within gshBat 3368.055 kb on + strand, within gshBat 3368.095 kb on + strand, within gshBat 3368.166 kb on + strand, within gshBat 3368.167 kb on - strand, within gshBat 3368.243 kb on - strand, within gshBat 3368.243 kb on - strand, within gshBat 3368.243 kb on - strand, within gshBat 3368.245 kb on - strand, within gshBat 3368.245 kb on - strand, within gshBat 3368.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,365,817 + yggR NIAGMN_17025 0.69 -0.7
3,365,817 + yggR NIAGMN_17025 0.69 +1.2
3,365,817 + yggR NIAGMN_17025 0.69 -0.2
3,365,818 - yggR NIAGMN_17025 0.69 +0.5
3,365,821 + yggR NIAGMN_17025 0.69 +0.4
3,365,821 + yggR NIAGMN_17025 0.69 -0.7
3,365,821 + yggR NIAGMN_17025 0.69 +0.7
3,365,821 + yggR NIAGMN_17025 0.69 +0.3
3,365,821 + yggR NIAGMN_17025 0.69 -0.7
3,365,821 + yggR NIAGMN_17025 0.69 +0.7
3,365,821 + yggR NIAGMN_17025 0.69 -0.7
3,365,821 + yggR NIAGMN_17025 0.69 -0.1
3,365,821 + yggR NIAGMN_17025 0.69 -0.0
3,365,821 + yggR NIAGMN_17025 0.69 -0.0
3,365,821 + yggR NIAGMN_17025 0.69 -0.1
3,365,822 - yggR NIAGMN_17025 0.69 +0.3
3,365,822 - yggR NIAGMN_17025 0.69 -0.2
3,365,822 - yggR NIAGMN_17025 0.69 +0.6
3,365,822 - yggR NIAGMN_17025 0.69 +0.1
3,365,822 - yggR NIAGMN_17025 0.69 +0.2
3,365,908 + yggR NIAGMN_17025 0.78 -0.6
3,366,046 + -0.2
3,366,076 - -0.2
3,366,093 - -0.5
3,366,093 - +0.4
3,366,159 + -1.0
3,366,171 - +0.5
3,366,208 + +0.2
3,366,208 + -0.1
3,366,208 + -1.4
3,366,269 - +0.8
3,366,281 + +0.2
3,366,284 + -0.3
3,366,284 + -0.3
3,366,284 + -0.5
3,366,285 - -0.4
3,366,285 - +0.1
3,366,285 - +0.4
3,366,288 + +1.0
3,366,288 + +0.0
3,366,289 - -0.2
3,366,316 + -0.6
3,366,317 - +0.6
3,366,317 - +0.0
3,367,205 - yqgE NIAGMN_17035 0.75 +0.6
3,367,205 - yqgE NIAGMN_17035 0.75 +0.3
3,367,208 - yqgE NIAGMN_17035 0.75 +0.4
3,367,208 - yqgE NIAGMN_17035 0.75 +0.2
3,367,208 - yqgE NIAGMN_17035 0.75 +0.4
3,367,208 - yqgE NIAGMN_17035 0.75 +0.9
3,367,208 - yqgE NIAGMN_17035 0.75 -2.4
3,367,222 - yqgE NIAGMN_17035 0.77 -1.0
3,367,271 - yqgE NIAGMN_17035 0.85 -1.2
3,367,271 - yqgE NIAGMN_17035 0.85 +0.0
3,367,287 - yqgE NIAGMN_17035 0.87 +1.0
3,367,341 - -0.3
3,367,407 + -2.7
3,367,407 + +0.1
3,367,407 + +0.4
3,367,407 + -0.3
3,367,408 - -1.1
3,367,408 - +0.3
3,367,408 - -0.1
3,367,408 - -0.8
3,367,416 - -1.3
3,367,440 - +0.8
3,367,486 + -0.4
3,367,487 - -0.6
3,367,507 + gshB NIAGMN_17040 0.11 +0.9
3,367,507 + gshB NIAGMN_17040 0.11 +0.6
3,367,508 - gshB NIAGMN_17040 0.11 -1.2
3,367,508 - gshB NIAGMN_17040 0.11 -0.7
3,367,925 - gshB NIAGMN_17040 0.55 -1.3
3,367,925 - gshB NIAGMN_17040 0.55 +0.2
3,368,054 - gshB NIAGMN_17040 0.68 -0.4
3,368,055 + gshB NIAGMN_17040 0.68 -0.4
3,368,095 + gshB NIAGMN_17040 0.73 -0.3
3,368,166 + gshB NIAGMN_17040 0.80 -1.1
3,368,167 - gshB NIAGMN_17040 0.80 -0.7
3,368,243 - gshB NIAGMN_17040 0.88 -1.3
3,368,243 - gshB NIAGMN_17040 0.88 -1.0
3,368,243 - gshB NIAGMN_17040 0.88 -1.2
3,368,245 - gshB NIAGMN_17040 0.89 -0.4
3,368,245 - gshB NIAGMN_17040 0.89 -1.1
3,368,355 - -0.4

Or see this region's nucleotide sequence