Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16935

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_16930 and Phe_trna are separated by 197 nucleotidesPhe_trna and yqgA are separated by 105 nucleotides NIAGMN_16930: NIAGMN_16930 - integrase, at 3,348,232 to 3,349,497 _16930 NIAGMN_16935: Phe_trna - tRNA-Phe(gaa), at 3,349,695 to 3,349,770 _trna NIAGMN_16940: yqgA - Uncharacterized protein YqgA, at 3,349,876 to 3,350,583 yqgA Position (kb) 3349 3350Strain fitness (log2 ratio) -2 -1 0 1 2at 3348.810 kb on + strand, within NIAGMN_16930at 3348.842 kb on + strand, within NIAGMN_16930at 3348.842 kb on + strand, within NIAGMN_16930at 3348.842 kb on + strand, within NIAGMN_16930at 3348.843 kb on - strand, within NIAGMN_16930at 3348.843 kb on - strand, within NIAGMN_16930at 3348.843 kb on - strand, within NIAGMN_16930at 3348.843 kb on - strand, within NIAGMN_16930at 3348.853 kb on - strand, within NIAGMN_16930at 3348.853 kb on - strand, within NIAGMN_16930at 3348.948 kb on + strand, within NIAGMN_16930at 3348.948 kb on + strand, within NIAGMN_16930at 3348.949 kb on - strand, within NIAGMN_16930at 3348.949 kb on - strand, within NIAGMN_16930at 3348.950 kb on + strand, within NIAGMN_16930at 3348.950 kb on + strand, within NIAGMN_16930at 3348.950 kb on + strand, within NIAGMN_16930at 3348.950 kb on + strand, within NIAGMN_16930at 3348.951 kb on - strand, within NIAGMN_16930at 3348.951 kb on - strand, within NIAGMN_16930at 3348.977 kb on + strand, within NIAGMN_16930at 3348.994 kb on + strand, within NIAGMN_16930at 3349.114 kb on + strand, within NIAGMN_16930at 3349.114 kb on + strand, within NIAGMN_16930at 3349.115 kb on - strand, within NIAGMN_16930at 3349.115 kb on - strand, within NIAGMN_16930at 3349.115 kb on - strand, within NIAGMN_16930at 3349.115 kb on - strand, within NIAGMN_16930at 3349.115 kb on - strand, within NIAGMN_16930at 3349.173 kb on + strand, within NIAGMN_16930at 3349.197 kb on + strand, within NIAGMN_16930at 3349.197 kb on + strand, within NIAGMN_16930at 3349.197 kb on + strand, within NIAGMN_16930at 3349.229 kb on - strand, within NIAGMN_16930at 3349.321 kb on + strand, within NIAGMN_16930at 3349.321 kb on + strand, within NIAGMN_16930at 3349.321 kb on + strand, within NIAGMN_16930at 3349.322 kb on - strand, within NIAGMN_16930at 3349.322 kb on - strand, within NIAGMN_16930at 3349.322 kb on - strand, within NIAGMN_16930at 3349.322 kb on - strand, within NIAGMN_16930at 3349.332 kb on - strand, within NIAGMN_16930at 3349.368 kb on + strand, within NIAGMN_16930at 3349.368 kb on + strand, within NIAGMN_16930at 3349.401 kb on + strandat 3349.401 kb on + strandat 3349.401 kb on + strandat 3349.402 kb on - strandat 3349.408 kb on + strandat 3349.409 kb on - strandat 3349.409 kb on - strandat 3349.443 kb on + strandat 3349.443 kb on + strandat 3349.444 kb on - strandat 3349.444 kb on - strandat 3349.445 kb on + strandat 3349.446 kb on - strandat 3349.446 kb on - strandat 3349.497 kb on + strandat 3349.497 kb on + strandat 3349.498 kb on - strandat 3349.498 kb on - strandat 3349.498 kb on - strandat 3349.550 kb on + strandat 3349.562 kb on + strandat 3349.562 kb on + strandat 3349.562 kb on + strandat 3349.563 kb on - strandat 3349.563 kb on - strandat 3349.611 kb on - strandat 3349.637 kb on - strandat 3349.637 kb on - strandat 3349.783 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.845 kb on + strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.960 kb on - strand, within yqgAat 3349.960 kb on - strand, within yqgAat 3349.976 kb on - strand, within yqgAat 3349.976 kb on - strand, within yqgAat 3350.051 kb on - strand, within yqgAat 3350.093 kb on - strand, within yqgAat 3350.093 kb on - strand, within yqgAat 3350.103 kb on + strand, within yqgAat 3350.103 kb on + strand, within yqgAat 3350.103 kb on + strand, within yqgAat 3350.104 kb on - strand, within yqgAat 3350.122 kb on - strand, within yqgAat 3350.257 kb on - strand, within yqgAat 3350.268 kb on - strand, within yqgAat 3350.268 kb on - strand, within yqgAat 3350.268 kb on - strand, within yqgAat 3350.301 kb on + strand, within yqgAat 3350.302 kb on - strand, within yqgAat 3350.302 kb on - strand, within yqgAat 3350.302 kb on - strand, within yqgAat 3350.302 kb on - strand, within yqgAat 3350.344 kb on - strand, within yqgAat 3350.380 kb on + strand, within yqgAat 3350.380 kb on + strand, within yqgAat 3350.380 kb on + strand, within yqgAat 3350.393 kb on - strand, within yqgAat 3350.401 kb on + strand, within yqgAat 3350.401 kb on + strand, within yqgAat 3350.401 kb on + strand, within yqgAat 3350.401 kb on + strand, within yqgAat 3350.401 kb on + strand, within yqgAat 3350.401 kb on + strand, within yqgAat 3350.402 kb on - strand, within yqgAat 3350.402 kb on - strand, within yqgAat 3350.440 kb on + strand, within yqgAat 3350.441 kb on - strand, within yqgAat 3350.441 kb on - strand, within yqgAat 3350.445 kb on + strand, within yqgAat 3350.497 kb on - strand, within yqgAat 3350.517 kb on + strandat 3350.548 kb on + strandat 3350.549 kb on - strandat 3350.549 kb on - strandat 3350.565 kb on + strandat 3350.565 kb on + strandat 3350.596 kb on + strandat 3350.597 kb on - strandat 3350.597 kb on - strandat 3350.603 kb on - strandat 3350.618 kb on + strandat 3350.618 kb on + strandat 3350.621 kb on + strandat 3350.752 kb on + strandat 3350.752 kb on + strandat 3350.752 kb on + strandat 3350.752 kb on + strandat 3350.753 kb on - strandat 3350.753 kb on - strandat 3350.753 kb on - strandat 3350.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,348,810 + NIAGMN_16930 0.46 +0.4
3,348,842 + NIAGMN_16930 0.48 -0.3
3,348,842 + NIAGMN_16930 0.48 +0.7
3,348,842 + NIAGMN_16930 0.48 +0.6
3,348,843 - NIAGMN_16930 0.48 +0.0
3,348,843 - NIAGMN_16930 0.48 -0.2
3,348,843 - NIAGMN_16930 0.48 -0.3
3,348,843 - NIAGMN_16930 0.48 +1.0
3,348,853 - NIAGMN_16930 0.49 +0.5
3,348,853 - NIAGMN_16930 0.49 -0.4
3,348,948 + NIAGMN_16930 0.57 -0.7
3,348,948 + NIAGMN_16930 0.57 -0.8
3,348,949 - NIAGMN_16930 0.57 +0.0
3,348,949 - NIAGMN_16930 0.57 +0.2
3,348,950 + NIAGMN_16930 0.57 +0.3
3,348,950 + NIAGMN_16930 0.57 -0.8
3,348,950 + NIAGMN_16930 0.57 +0.7
3,348,950 + NIAGMN_16930 0.57 +0.4
3,348,951 - NIAGMN_16930 0.57 +2.5
3,348,951 - NIAGMN_16930 0.57 +0.2
3,348,977 + NIAGMN_16930 0.59 +0.5
3,348,994 + NIAGMN_16930 0.60 -0.3
3,349,114 + NIAGMN_16930 0.70 +0.1
3,349,114 + NIAGMN_16930 0.70 -1.5
3,349,115 - NIAGMN_16930 0.70 +0.6
3,349,115 - NIAGMN_16930 0.70 -0.8
3,349,115 - NIAGMN_16930 0.70 -2.4
3,349,115 - NIAGMN_16930 0.70 +0.4
3,349,115 - NIAGMN_16930 0.70 +0.8
3,349,173 + NIAGMN_16930 0.74 +0.2
3,349,197 + NIAGMN_16930 0.76 +1.2
3,349,197 + NIAGMN_16930 0.76 +0.5
3,349,197 + NIAGMN_16930 0.76 +0.6
3,349,229 - NIAGMN_16930 0.79 +0.0
3,349,321 + NIAGMN_16930 0.86 -0.9
3,349,321 + NIAGMN_16930 0.86 -0.8
3,349,321 + NIAGMN_16930 0.86 +0.6
3,349,322 - NIAGMN_16930 0.86 +0.1
3,349,322 - NIAGMN_16930 0.86 -1.0
3,349,322 - NIAGMN_16930 0.86 +0.6
3,349,322 - NIAGMN_16930 0.86 -0.4
3,349,332 - NIAGMN_16930 0.87 +0.2
3,349,368 + NIAGMN_16930 0.90 +0.0
3,349,368 + NIAGMN_16930 0.90 -0.2
3,349,401 + +0.1
3,349,401 + -0.1
3,349,401 + +0.0
3,349,402 - -0.5
3,349,408 + +0.5
3,349,409 - +0.3
3,349,409 - -0.1
3,349,443 + -0.5
3,349,443 + +0.5
3,349,444 - +0.5
3,349,444 - -0.6
3,349,445 + -0.8
3,349,446 - +0.5
3,349,446 - -0.3
3,349,497 + +0.8
3,349,497 + -0.7
3,349,498 - +0.9
3,349,498 - +0.4
3,349,498 - -0.7
3,349,550 + -0.1
3,349,562 + +0.4
3,349,562 + +0.0
3,349,562 + -1.0
3,349,563 - -0.2
3,349,563 - -1.2
3,349,611 - -0.6
3,349,637 - -0.3
3,349,637 - -0.7
3,349,783 + -0.1
3,349,845 + +0.2
3,349,845 + +0.7
3,349,845 + -0.6
3,349,845 + +0.3
3,349,845 + +0.0
3,349,845 + +0.9
3,349,845 + -1.4
3,349,845 + +1.0
3,349,846 - +0.7
3,349,846 - +0.2
3,349,846 - -2.1
3,349,846 - +0.0
3,349,846 - -0.3
3,349,846 - +0.1
3,349,960 - yqgA NIAGMN_16940 0.12 +0.1
3,349,960 - yqgA NIAGMN_16940 0.12 -0.6
3,349,976 - yqgA NIAGMN_16940 0.14 -0.8
3,349,976 - yqgA NIAGMN_16940 0.14 +0.4
3,350,051 - yqgA NIAGMN_16940 0.25 +0.7
3,350,093 - yqgA NIAGMN_16940 0.31 -0.0
3,350,093 - yqgA NIAGMN_16940 0.31 +0.2
3,350,103 + yqgA NIAGMN_16940 0.32 -0.8
3,350,103 + yqgA NIAGMN_16940 0.32 -0.3
3,350,103 + yqgA NIAGMN_16940 0.32 -0.5
3,350,104 - yqgA NIAGMN_16940 0.32 +0.1
3,350,122 - yqgA NIAGMN_16940 0.35 -0.3
3,350,257 - yqgA NIAGMN_16940 0.54 -1.1
3,350,268 - yqgA NIAGMN_16940 0.55 -0.2
3,350,268 - yqgA NIAGMN_16940 0.55 +0.4
3,350,268 - yqgA NIAGMN_16940 0.55 +0.3
3,350,301 + yqgA NIAGMN_16940 0.60 +0.7
3,350,302 - yqgA NIAGMN_16940 0.60 +0.2
3,350,302 - yqgA NIAGMN_16940 0.60 -0.0
3,350,302 - yqgA NIAGMN_16940 0.60 -1.8
3,350,302 - yqgA NIAGMN_16940 0.60 -0.0
3,350,344 - yqgA NIAGMN_16940 0.66 -0.3
3,350,380 + yqgA NIAGMN_16940 0.71 +0.5
3,350,380 + yqgA NIAGMN_16940 0.71 +1.6
3,350,380 + yqgA NIAGMN_16940 0.71 -0.8
3,350,393 - yqgA NIAGMN_16940 0.73 -0.2
3,350,401 + yqgA NIAGMN_16940 0.74 -0.1
3,350,401 + yqgA NIAGMN_16940 0.74 -1.1
3,350,401 + yqgA NIAGMN_16940 0.74 +0.3
3,350,401 + yqgA NIAGMN_16940 0.74 -2.3
3,350,401 + yqgA NIAGMN_16940 0.74 +0.5
3,350,401 + yqgA NIAGMN_16940 0.74 +0.2
3,350,402 - yqgA NIAGMN_16940 0.74 +0.4
3,350,402 - yqgA NIAGMN_16940 0.74 +0.1
3,350,440 + yqgA NIAGMN_16940 0.80 +0.4
3,350,441 - yqgA NIAGMN_16940 0.80 +0.9
3,350,441 - yqgA NIAGMN_16940 0.80 +1.4
3,350,445 + yqgA NIAGMN_16940 0.80 +0.2
3,350,497 - yqgA NIAGMN_16940 0.88 +0.9
3,350,517 + -2.3
3,350,548 + +0.7
3,350,549 - +0.2
3,350,549 - -0.2
3,350,565 + -2.3
3,350,565 + -0.8
3,350,596 + +0.6
3,350,597 - -0.3
3,350,597 - -1.3
3,350,603 - -0.1
3,350,618 + -1.0
3,350,618 + -1.5
3,350,621 + -1.2
3,350,752 + -0.7
3,350,752 + -0.8
3,350,752 + -0.0
3,350,752 + +0.5
3,350,753 - -1.6
3,350,753 - -0.3
3,350,753 - -1.5
3,350,753 - -0.1

Or see this region's nucleotide sequence