Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16485

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcca and ygiM are separated by 63 nucleotidesygiM and ygiF are separated by 241 nucleotides NIAGMN_16480: cca - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 3,259,072 to 3,260,310 cca NIAGMN_16485: ygiM - TIGR04211 family SH3 domain-containing protein, at 3,260,374 to 3,260,994 ygiM NIAGMN_16490: ygiF - inorganic triphosphatase, at 3,261,236 to 3,262,537 ygiF Position (kb) 3260 3261Strain fitness (log2 ratio) -2 -1 0 1 2at 3260.332 kb on - strandat 3260.343 kb on - strandat 3260.343 kb on - strandat 3260.348 kb on + strandat 3260.348 kb on + strandat 3260.348 kb on + strandat 3260.348 kb on + strandat 3260.348 kb on + strandat 3260.349 kb on - strandat 3260.375 kb on + strandat 3260.376 kb on - strandat 3260.469 kb on - strand, within ygiMat 3260.469 kb on - strand, within ygiMat 3260.469 kb on - strand, within ygiMat 3260.469 kb on - strand, within ygiMat 3260.472 kb on + strand, within ygiMat 3260.472 kb on + strand, within ygiMat 3260.472 kb on + strand, within ygiMat 3260.473 kb on - strand, within ygiMat 3260.473 kb on - strand, within ygiMat 3260.473 kb on - strand, within ygiMat 3260.584 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.739 kb on + strand, within ygiMat 3260.740 kb on - strand, within ygiMat 3260.740 kb on - strand, within ygiMat 3260.740 kb on - strand, within ygiMat 3260.740 kb on - strand, within ygiMat 3260.795 kb on + strand, within ygiMat 3260.796 kb on - strand, within ygiMat 3260.796 kb on - strand, within ygiMat 3260.796 kb on - strand, within ygiMat 3260.796 kb on - strand, within ygiMat 3260.818 kb on + strand, within ygiMat 3260.818 kb on + strand, within ygiMat 3260.819 kb on - strand, within ygiMat 3260.821 kb on + strand, within ygiMat 3260.821 kb on + strand, within ygiMat 3260.821 kb on + strand, within ygiMat 3260.822 kb on - strand, within ygiMat 3260.822 kb on - strand, within ygiMat 3260.896 kb on - strand, within ygiMat 3260.953 kb on - strandat 3260.969 kb on - strandat 3261.030 kb on - strandat 3261.033 kb on - strandat 3261.050 kb on + strandat 3261.115 kb on - strandat 3261.157 kb on + strandat 3261.157 kb on + strandat 3261.157 kb on + strandat 3261.157 kb on + strandat 3261.158 kb on - strandat 3261.158 kb on - strandat 3261.160 kb on + strandat 3261.161 kb on - strandat 3261.161 kb on - strandat 3261.164 kb on + strandat 3261.164 kb on + strandat 3261.165 kb on - strandat 3261.165 kb on - strandat 3261.165 kb on - strandat 3261.185 kb on + strandat 3261.186 kb on - strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.208 kb on + strandat 3261.209 kb on - strandat 3261.209 kb on - strandat 3261.209 kb on - strandat 3261.217 kb on + strandat 3261.218 kb on - strandat 3261.224 kb on + strandat 3261.228 kb on + strandat 3261.228 kb on + strandat 3261.228 kb on + strandat 3261.229 kb on - strandat 3261.229 kb on - strandat 3261.229 kb on - strandat 3261.229 kb on - strandat 3261.256 kb on - strandat 3261.262 kb on + strandat 3261.262 kb on + strandat 3261.262 kb on + strandat 3261.268 kb on + strandat 3261.307 kb on + strandat 3261.349 kb on + strandat 3261.349 kb on + strandat 3261.349 kb on + strandat 3261.350 kb on - strandat 3261.353 kb on + strandat 3261.371 kb on - strand, within ygiFat 3261.399 kb on + strand, within ygiFat 3261.399 kb on + strand, within ygiFat 3261.400 kb on - strand, within ygiFat 3261.400 kb on - strand, within ygiFat 3261.403 kb on + strand, within ygiFat 3261.404 kb on - strand, within ygiFat 3261.426 kb on - strand, within ygiFat 3261.485 kb on + strand, within ygiFat 3261.487 kb on + strand, within ygiFat 3261.487 kb on + strand, within ygiFat 3261.487 kb on + strand, within ygiFat 3261.488 kb on - strand, within ygiFat 3261.528 kb on + strand, within ygiFat 3261.582 kb on + strand, within ygiFat 3261.583 kb on - strand, within ygiFat 3261.609 kb on - strand, within ygiFat 3261.700 kb on + strand, within ygiFat 3261.700 kb on + strand, within ygiFat 3261.700 kb on + strand, within ygiFat 3261.701 kb on - strand, within ygiFat 3261.771 kb on + strand, within ygiF

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,260,332 - +0.5
3,260,343 - +0.2
3,260,343 - +0.4
3,260,348 + +0.8
3,260,348 + -2.4
3,260,348 + +0.8
3,260,348 + -1.1
3,260,348 + -0.4
3,260,349 - +2.0
3,260,375 + -0.2
3,260,376 - +0.5
3,260,469 - ygiM NIAGMN_16485 0.15 +0.4
3,260,469 - ygiM NIAGMN_16485 0.15 +0.1
3,260,469 - ygiM NIAGMN_16485 0.15 +0.1
3,260,469 - ygiM NIAGMN_16485 0.15 -0.5
3,260,472 + ygiM NIAGMN_16485 0.16 -0.4
3,260,472 + ygiM NIAGMN_16485 0.16 +0.0
3,260,472 + ygiM NIAGMN_16485 0.16 +0.4
3,260,473 - ygiM NIAGMN_16485 0.16 +0.1
3,260,473 - ygiM NIAGMN_16485 0.16 +0.1
3,260,473 - ygiM NIAGMN_16485 0.16 -0.6
3,260,584 + ygiM NIAGMN_16485 0.34 -0.8
3,260,739 + ygiM NIAGMN_16485 0.59 +0.2
3,260,739 + ygiM NIAGMN_16485 0.59 +0.4
3,260,739 + ygiM NIAGMN_16485 0.59 +0.6
3,260,739 + ygiM NIAGMN_16485 0.59 +0.5
3,260,739 + ygiM NIAGMN_16485 0.59 -1.6
3,260,739 + ygiM NIAGMN_16485 0.59 +1.0
3,260,739 + ygiM NIAGMN_16485 0.59 +0.3
3,260,739 + ygiM NIAGMN_16485 0.59 -0.2
3,260,740 - ygiM NIAGMN_16485 0.59 -0.3
3,260,740 - ygiM NIAGMN_16485 0.59 +0.2
3,260,740 - ygiM NIAGMN_16485 0.59 +0.7
3,260,740 - ygiM NIAGMN_16485 0.59 +0.2
3,260,795 + ygiM NIAGMN_16485 0.68 +1.8
3,260,796 - ygiM NIAGMN_16485 0.68 +0.5
3,260,796 - ygiM NIAGMN_16485 0.68 -0.2
3,260,796 - ygiM NIAGMN_16485 0.68 -0.8
3,260,796 - ygiM NIAGMN_16485 0.68 +0.1
3,260,818 + ygiM NIAGMN_16485 0.71 -0.0
3,260,818 + ygiM NIAGMN_16485 0.71 +0.7
3,260,819 - ygiM NIAGMN_16485 0.72 +0.2
3,260,821 + ygiM NIAGMN_16485 0.72 +1.8
3,260,821 + ygiM NIAGMN_16485 0.72 +0.0
3,260,821 + ygiM NIAGMN_16485 0.72 +0.5
3,260,822 - ygiM NIAGMN_16485 0.72 -2.0
3,260,822 - ygiM NIAGMN_16485 0.72 +0.5
3,260,896 - ygiM NIAGMN_16485 0.84 +1.9
3,260,953 - +0.1
3,260,969 - +0.4
3,261,030 - -2.4
3,261,033 - -0.2
3,261,050 + +0.7
3,261,115 - +0.3
3,261,157 + +0.9
3,261,157 + -0.7
3,261,157 + +0.1
3,261,157 + -0.3
3,261,158 - -0.3
3,261,158 - -0.3
3,261,160 + +0.5
3,261,161 - +1.4
3,261,161 - -0.5
3,261,164 + +0.1
3,261,164 + +0.0
3,261,165 - +0.1
3,261,165 - +0.0
3,261,165 - +0.1
3,261,185 + +0.5
3,261,186 - -0.6
3,261,208 + +0.0
3,261,208 + -1.0
3,261,208 + +0.3
3,261,208 + +0.4
3,261,208 + +0.4
3,261,208 + -0.1
3,261,208 + +1.6
3,261,208 + +1.0
3,261,208 + +0.9
3,261,209 - -0.1
3,261,209 - +0.1
3,261,209 - -1.4
3,261,217 + +0.1
3,261,218 - -1.2
3,261,224 + -0.3
3,261,228 + +0.5
3,261,228 + -0.1
3,261,228 + -0.1
3,261,229 - +0.5
3,261,229 - +0.9
3,261,229 - +0.3
3,261,229 - -2.0
3,261,256 - +1.0
3,261,262 + -0.1
3,261,262 + -0.5
3,261,262 + +0.4
3,261,268 + -0.5
3,261,307 + -1.0
3,261,349 + +0.3
3,261,349 + -2.0
3,261,349 + +0.3
3,261,350 - +1.0
3,261,353 + +0.8
3,261,371 - ygiF NIAGMN_16490 0.10 +1.2
3,261,399 + ygiF NIAGMN_16490 0.13 +0.5
3,261,399 + ygiF NIAGMN_16490 0.13 -0.7
3,261,400 - ygiF NIAGMN_16490 0.13 +0.8
3,261,400 - ygiF NIAGMN_16490 0.13 -0.2
3,261,403 + ygiF NIAGMN_16490 0.13 +0.2
3,261,404 - ygiF NIAGMN_16490 0.13 -0.5
3,261,426 - ygiF NIAGMN_16490 0.15 -0.4
3,261,485 + ygiF NIAGMN_16490 0.19 +0.8
3,261,487 + ygiF NIAGMN_16490 0.19 +0.2
3,261,487 + ygiF NIAGMN_16490 0.19 +0.2
3,261,487 + ygiF NIAGMN_16490 0.19 +0.6
3,261,488 - ygiF NIAGMN_16490 0.19 +1.2
3,261,528 + ygiF NIAGMN_16490 0.22 +1.3
3,261,582 + ygiF NIAGMN_16490 0.27 +2.7
3,261,583 - ygiF NIAGMN_16490 0.27 -0.1
3,261,609 - ygiF NIAGMN_16490 0.29 +0.7
3,261,700 + ygiF NIAGMN_16490 0.36 +0.1
3,261,700 + ygiF NIAGMN_16490 0.36 +1.2
3,261,700 + ygiF NIAGMN_16490 0.36 -0.1
3,261,701 - ygiF NIAGMN_16490 0.36 +0.8
3,261,771 + ygiF NIAGMN_16490 0.41 +0.9

Or see this region's nucleotide sequence