Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14860

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmrcA and hofM are separated by 119 nucleotideshofM and hofN overlap by 17 nucleotideshofN and hofO overlap by 17 nucleotideshofO and hofP overlap by 11 nucleotideshofP and hofQ overlap by 59 nucleotides NIAGMN_14850: mrcA - peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA, at 2,964,111 to 2,966,663 mrcA NIAGMN_14855: hofM - DNA utilization protein HofM, at 2,966,783 to 2,967,577 hofM NIAGMN_14860: hofN - Putative DNA utilization protein HofN, at 2,967,561 to 2,968,100 hofN NIAGMN_14865: hofO - DNA utilization protein HofO, at 2,968,084 to 2,968,524 hofO NIAGMN_14870: hofP - DNA utilization protein HofP, at 2,968,514 to 2,968,918 hofP NIAGMN_14875: hofQ - DNA uptake porin HofQ, at 2,968,860 to 2,970,068 hofQ Position (kb) 2967 2968 2969Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2966.582 kb on - strandat 2966.587 kb on + strandat 2966.588 kb on - strandat 2966.588 kb on - strandat 2966.589 kb on + strandat 2966.589 kb on + strandat 2966.589 kb on + strandat 2966.589 kb on + strandat 2966.589 kb on + strandat 2966.590 kb on - strandat 2966.596 kb on + strandat 2966.596 kb on + strandat 2966.596 kb on + strandat 2966.647 kb on + strandat 2966.679 kb on + strandat 2966.679 kb on + strandat 2966.679 kb on + strandat 2966.680 kb on - strandat 2966.698 kb on + strandat 2966.698 kb on + strandat 2966.698 kb on + strandat 2966.699 kb on - strandat 2966.701 kb on - strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.718 kb on + strandat 2966.719 kb on - strandat 2966.719 kb on - strandat 2966.719 kb on - strandat 2966.719 kb on - strandat 2966.719 kb on - strandat 2966.719 kb on - strandat 2966.720 kb on + strandat 2966.721 kb on - strandat 2966.721 kb on - strandat 2966.743 kb on + strandat 2966.743 kb on + strandat 2966.743 kb on + strandat 2966.744 kb on - strandat 2966.744 kb on - strandat 2966.744 kb on - strandat 2966.744 kb on - strandat 2966.744 kb on - strandat 2966.744 kb on - strandat 2966.744 kb on - strandat 2966.745 kb on + strandat 2966.745 kb on + strandat 2966.746 kb on - strandat 2966.746 kb on - strandat 2966.767 kb on + strandat 2966.768 kb on - strandat 2966.791 kb on + strandat 2966.791 kb on + strandat 2966.792 kb on - strandat 2966.817 kb on + strandat 2966.817 kb on + strandat 2966.817 kb on + strandat 2966.817 kb on + strandat 2966.818 kb on - strandat 2966.845 kb on + strandat 2966.911 kb on + strand, within hofMat 2966.961 kb on + strand, within hofMat 2966.962 kb on - strand, within hofMat 2966.962 kb on - strand, within hofMat 2966.962 kb on - strand, within hofMat 2967.028 kb on - strand, within hofMat 2967.028 kb on - strand, within hofMat 2967.028 kb on - strand, within hofMat 2967.170 kb on + strand, within hofMat 2967.170 kb on + strand, within hofMat 2967.171 kb on - strand, within hofMat 2967.172 kb on + strand, within hofMat 2967.173 kb on - strand, within hofMat 2967.214 kb on + strand, within hofMat 2967.214 kb on + strand, within hofMat 2967.215 kb on - strand, within hofMat 2967.215 kb on - strand, within hofMat 2967.215 kb on - strand, within hofMat 2967.244 kb on + strand, within hofMat 2967.245 kb on - strand, within hofMat 2967.273 kb on + strand, within hofMat 2967.273 kb on + strand, within hofMat 2967.274 kb on - strand, within hofMat 2967.274 kb on - strand, within hofMat 2967.274 kb on - strand, within hofMat 2967.274 kb on - strand, within hofMat 2967.274 kb on - strand, within hofMat 2967.294 kb on + strand, within hofMat 2967.295 kb on - strand, within hofMat 2967.295 kb on - strand, within hofMat 2967.392 kb on - strand, within hofMat 2967.392 kb on - strand, within hofMat 2967.444 kb on + strand, within hofMat 2967.444 kb on + strand, within hofMat 2967.557 kb on - strandat 2967.673 kb on + strand, within hofNat 2967.674 kb on - strand, within hofNat 2967.676 kb on + strand, within hofNat 2967.676 kb on + strand, within hofNat 2967.677 kb on - strand, within hofNat 2967.677 kb on - strand, within hofNat 2967.677 kb on - strand, within hofNat 2967.677 kb on - strand, within hofNat 2967.709 kb on + strand, within hofNat 2967.754 kb on + strand, within hofNat 2967.754 kb on + strand, within hofNat 2967.754 kb on + strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.755 kb on - strand, within hofNat 2967.761 kb on - strand, within hofNat 2967.877 kb on + strand, within hofNat 2967.904 kb on + strand, within hofNat 2967.941 kb on + strand, within hofNat 2967.941 kb on + strand, within hofNat 2967.941 kb on + strand, within hofNat 2967.941 kb on + strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.942 kb on - strand, within hofNat 2967.953 kb on + strand, within hofNat 2967.971 kb on - strand, within hofNat 2968.059 kb on + strandat 2968.060 kb on - strandat 2968.066 kb on + strandat 2968.066 kb on + strandat 2968.163 kb on + strand, within hofOat 2968.163 kb on + strand, within hofOat 2968.163 kb on + strand, within hofOat 2968.164 kb on - strand, within hofOat 2968.167 kb on + strand, within hofOat 2968.168 kb on - strand, within hofOat 2968.168 kb on - strand, within hofOat 2968.168 kb on - strand, within hofOat 2968.168 kb on - strand, within hofOat 2968.168 kb on - strand, within hofOat 2968.168 kb on - strand, within hofOat 2968.258 kb on + strand, within hofOat 2968.259 kb on - strand, within hofOat 2968.419 kb on + strand, within hofOat 2968.419 kb on + strand, within hofOat 2968.463 kb on + strand, within hofOat 2968.543 kb on + strandat 2968.543 kb on + strandat 2968.544 kb on - strandat 2968.544 kb on - strandat 2968.582 kb on + strand, within hofPat 2968.582 kb on + strand, within hofPat 2968.582 kb on + strand, within hofPat 2968.599 kb on + strand, within hofPat 2968.671 kb on + strand, within hofPat 2968.671 kb on + strand, within hofPat 2968.674 kb on + strand, within hofPat 2968.675 kb on - strand, within hofPat 2968.675 kb on - strand, within hofPat 2968.675 kb on - strand, within hofPat 2968.756 kb on - strand, within hofPat 2968.761 kb on + strand, within hofPat 2968.761 kb on + strand, within hofPat 2968.761 kb on + strand, within hofPat 2968.762 kb on - strand, within hofPat 2968.762 kb on - strand, within hofPat 2968.762 kb on - strand, within hofPat 2968.762 kb on - strand, within hofPat 2968.762 kb on - strand, within hofPat 2968.764 kb on + strand, within hofPat 2968.764 kb on + strand, within hofPat 2968.764 kb on + strand, within hofPat 2968.765 kb on - strand, within hofPat 2968.765 kb on - strand, within hofPat 2968.765 kb on - strand, within hofPat 2968.825 kb on + strand, within hofPat 2968.826 kb on - strand, within hofPat 2968.826 kb on - strand, within hofPat 2968.852 kb on + strand, within hofPat 2968.852 kb on + strand, within hofPat 2968.852 kb on + strand, within hofPat 2968.853 kb on - strand, within hofPat 2968.853 kb on - strand, within hofPat 2968.853 kb on - strand, within hofPat 2968.853 kb on - strand, within hofPat 2968.853 kb on - strand, within hofPat 2968.853 kb on - strand, within hofPat 2968.876 kb on + strandat 2968.997 kb on + strand, within hofQat 2969.008 kb on + strand, within hofQat 2969.008 kb on + strand, within hofQat 2969.009 kb on - strand, within hofQat 2969.014 kb on + strand, within hofQat 2969.014 kb on + strand, within hofQat 2969.014 kb on + strand, within hofQat 2969.015 kb on - strand, within hofQat 2969.015 kb on - strand, within hofQat 2969.041 kb on + strand, within hofQat 2969.042 kb on - strand, within hofQat 2969.051 kb on - strand, within hofQ

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,966,582 - -0.9
2,966,587 + -1.8
2,966,588 - -0.7
2,966,588 - -1.5
2,966,589 + +0.5
2,966,589 + -2.4
2,966,589 + -0.5
2,966,589 + +0.8
2,966,589 + -0.9
2,966,590 - +0.5
2,966,596 + +0.8
2,966,596 + -2.5
2,966,596 + +0.4
2,966,647 + +0.3
2,966,679 + +0.0
2,966,679 + -0.8
2,966,679 + -0.1
2,966,680 - +0.5
2,966,698 + -2.9
2,966,698 + +0.5
2,966,698 + +0.3
2,966,699 - +0.3
2,966,701 - +0.1
2,966,718 + -1.0
2,966,718 + -0.1
2,966,718 + -1.2
2,966,718 + -0.2
2,966,718 + -0.5
2,966,718 + -2.3
2,966,718 + +0.0
2,966,718 + -0.9
2,966,718 + -0.1
2,966,718 + +0.6
2,966,718 + -0.3
2,966,719 - -0.1
2,966,719 - +0.0
2,966,719 - +0.7
2,966,719 - -0.4
2,966,719 - -0.3
2,966,719 - +0.9
2,966,720 + -0.6
2,966,721 - -0.3
2,966,721 - +0.1
2,966,743 + -0.4
2,966,743 + -0.1
2,966,743 + -0.1
2,966,744 - +1.0
2,966,744 - +0.1
2,966,744 - +0.3
2,966,744 - +0.6
2,966,744 - +0.3
2,966,744 - +0.2
2,966,744 - -2.3
2,966,745 + +0.9
2,966,745 + -0.0
2,966,746 - -0.3
2,966,746 - +0.1
2,966,767 + -0.4
2,966,768 - +0.4
2,966,791 + -0.1
2,966,791 + -0.1
2,966,792 - +0.1
2,966,817 + +0.6
2,966,817 + -0.0
2,966,817 + -0.2
2,966,817 + -0.6
2,966,818 - +0.7
2,966,845 + +0.1
2,966,911 + hofM NIAGMN_14855 0.16 +0.2
2,966,961 + hofM NIAGMN_14855 0.22 -0.9
2,966,962 - hofM NIAGMN_14855 0.23 -0.1
2,966,962 - hofM NIAGMN_14855 0.23 -0.4
2,966,962 - hofM NIAGMN_14855 0.23 -0.3
2,967,028 - hofM NIAGMN_14855 0.31 -0.3
2,967,028 - hofM NIAGMN_14855 0.31 -0.3
2,967,028 - hofM NIAGMN_14855 0.31 -0.2
2,967,170 + hofM NIAGMN_14855 0.49 +0.2
2,967,170 + hofM NIAGMN_14855 0.49 +0.1
2,967,171 - hofM NIAGMN_14855 0.49 -0.7
2,967,172 + hofM NIAGMN_14855 0.49 -0.2
2,967,173 - hofM NIAGMN_14855 0.49 +0.3
2,967,214 + hofM NIAGMN_14855 0.54 +0.2
2,967,214 + hofM NIAGMN_14855 0.54 +0.0
2,967,215 - hofM NIAGMN_14855 0.54 -0.4
2,967,215 - hofM NIAGMN_14855 0.54 +0.1
2,967,215 - hofM NIAGMN_14855 0.54 +0.2
2,967,244 + hofM NIAGMN_14855 0.58 -1.0
2,967,245 - hofM NIAGMN_14855 0.58 +0.8
2,967,273 + hofM NIAGMN_14855 0.62 -0.1
2,967,273 + hofM NIAGMN_14855 0.62 +0.0
2,967,274 - hofM NIAGMN_14855 0.62 -0.7
2,967,274 - hofM NIAGMN_14855 0.62 +0.1
2,967,274 - hofM NIAGMN_14855 0.62 -0.5
2,967,274 - hofM NIAGMN_14855 0.62 -0.5
2,967,274 - hofM NIAGMN_14855 0.62 -0.2
2,967,294 + hofM NIAGMN_14855 0.64 -0.4
2,967,295 - hofM NIAGMN_14855 0.64 -1.6
2,967,295 - hofM NIAGMN_14855 0.64 +0.0
2,967,392 - hofM NIAGMN_14855 0.77 +0.3
2,967,392 - hofM NIAGMN_14855 0.77 -0.0
2,967,444 + hofM NIAGMN_14855 0.83 +0.4
2,967,444 + hofM NIAGMN_14855 0.83 +0.3
2,967,557 - +0.5
2,967,673 + hofN NIAGMN_14860 0.21 +0.2
2,967,674 - hofN NIAGMN_14860 0.21 +0.3
2,967,676 + hofN NIAGMN_14860 0.21 -0.0
2,967,676 + hofN NIAGMN_14860 0.21 +0.5
2,967,677 - hofN NIAGMN_14860 0.21 -0.5
2,967,677 - hofN NIAGMN_14860 0.21 -0.1
2,967,677 - hofN NIAGMN_14860 0.21 -0.9
2,967,677 - hofN NIAGMN_14860 0.21 +1.2
2,967,709 + hofN NIAGMN_14860 0.27 +0.4
2,967,754 + hofN NIAGMN_14860 0.36 -0.2
2,967,754 + hofN NIAGMN_14860 0.36 +0.7
2,967,754 + hofN NIAGMN_14860 0.36 -2.3
2,967,755 - hofN NIAGMN_14860 0.36 -0.4
2,967,755 - hofN NIAGMN_14860 0.36 +0.3
2,967,755 - hofN NIAGMN_14860 0.36 -0.2
2,967,755 - hofN NIAGMN_14860 0.36 -0.5
2,967,755 - hofN NIAGMN_14860 0.36 -0.9
2,967,755 - hofN NIAGMN_14860 0.36 -0.3
2,967,755 - hofN NIAGMN_14860 0.36 +0.6
2,967,755 - hofN NIAGMN_14860 0.36 -0.0
2,967,761 - hofN NIAGMN_14860 0.37 -0.3
2,967,877 + hofN NIAGMN_14860 0.59 +0.5
2,967,904 + hofN NIAGMN_14860 0.64 +0.1
2,967,941 + hofN NIAGMN_14860 0.70 -0.1
2,967,941 + hofN NIAGMN_14860 0.70 +0.1
2,967,941 + hofN NIAGMN_14860 0.70 -0.2
2,967,941 + hofN NIAGMN_14860 0.70 -0.1
2,967,942 - hofN NIAGMN_14860 0.71 -0.2
2,967,942 - hofN NIAGMN_14860 0.71 -0.2
2,967,942 - hofN NIAGMN_14860 0.71 -0.5
2,967,942 - hofN NIAGMN_14860 0.71 +2.1
2,967,942 - hofN NIAGMN_14860 0.71 +0.0
2,967,942 - hofN NIAGMN_14860 0.71 +0.4
2,967,942 - hofN NIAGMN_14860 0.71 -1.1
2,967,942 - hofN NIAGMN_14860 0.71 +0.6
2,967,942 - hofN NIAGMN_14860 0.71 -0.0
2,967,953 + hofN NIAGMN_14860 0.73 +1.0
2,967,971 - hofN NIAGMN_14860 0.76 +0.1
2,968,059 + +0.2
2,968,060 - +0.0
2,968,066 + +1.1
2,968,066 + +0.1
2,968,163 + hofO NIAGMN_14865 0.18 +1.7
2,968,163 + hofO NIAGMN_14865 0.18 +0.2
2,968,163 + hofO NIAGMN_14865 0.18 -0.3
2,968,164 - hofO NIAGMN_14865 0.18 +0.8
2,968,167 + hofO NIAGMN_14865 0.19 +0.4
2,968,168 - hofO NIAGMN_14865 0.19 -0.3
2,968,168 - hofO NIAGMN_14865 0.19 -2.3
2,968,168 - hofO NIAGMN_14865 0.19 +0.0
2,968,168 - hofO NIAGMN_14865 0.19 -2.3
2,968,168 - hofO NIAGMN_14865 0.19 -0.4
2,968,168 - hofO NIAGMN_14865 0.19 -4.4
2,968,258 + hofO NIAGMN_14865 0.39 +0.2
2,968,259 - hofO NIAGMN_14865 0.40 +0.2
2,968,419 + hofO NIAGMN_14865 0.76 +0.1
2,968,419 + hofO NIAGMN_14865 0.76 +0.2
2,968,463 + hofO NIAGMN_14865 0.86 +0.7
2,968,543 + -0.2
2,968,543 + -0.3
2,968,544 - -0.6
2,968,544 - +0.2
2,968,582 + hofP NIAGMN_14870 0.17 +0.6
2,968,582 + hofP NIAGMN_14870 0.17 -0.0
2,968,582 + hofP NIAGMN_14870 0.17 +0.3
2,968,599 + hofP NIAGMN_14870 0.21 +2.6
2,968,671 + hofP NIAGMN_14870 0.39 +0.2
2,968,671 + hofP NIAGMN_14870 0.39 +0.4
2,968,674 + hofP NIAGMN_14870 0.40 +0.9
2,968,675 - hofP NIAGMN_14870 0.40 -0.0
2,968,675 - hofP NIAGMN_14870 0.40 +0.1
2,968,675 - hofP NIAGMN_14870 0.40 +0.6
2,968,756 - hofP NIAGMN_14870 0.60 -0.1
2,968,761 + hofP NIAGMN_14870 0.61 +0.5
2,968,761 + hofP NIAGMN_14870 0.61 -2.3
2,968,761 + hofP NIAGMN_14870 0.61 -0.7
2,968,762 - hofP NIAGMN_14870 0.61 +0.3
2,968,762 - hofP NIAGMN_14870 0.61 -0.2
2,968,762 - hofP NIAGMN_14870 0.61 +0.2
2,968,762 - hofP NIAGMN_14870 0.61 +0.5
2,968,762 - hofP NIAGMN_14870 0.61 +0.9
2,968,764 + hofP NIAGMN_14870 0.62 -0.8
2,968,764 + hofP NIAGMN_14870 0.62 -0.4
2,968,764 + hofP NIAGMN_14870 0.62 -0.2
2,968,765 - hofP NIAGMN_14870 0.62 +0.3
2,968,765 - hofP NIAGMN_14870 0.62 +0.1
2,968,765 - hofP NIAGMN_14870 0.62 +0.0
2,968,825 + hofP NIAGMN_14870 0.77 +0.4
2,968,826 - hofP NIAGMN_14870 0.77 +1.5
2,968,826 - hofP NIAGMN_14870 0.77 +0.6
2,968,852 + hofP NIAGMN_14870 0.83 +1.7
2,968,852 + hofP NIAGMN_14870 0.83 -0.2
2,968,852 + hofP NIAGMN_14870 0.83 -0.7
2,968,853 - hofP NIAGMN_14870 0.84 -3.1
2,968,853 - hofP NIAGMN_14870 0.84 -0.8
2,968,853 - hofP NIAGMN_14870 0.84 +0.8
2,968,853 - hofP NIAGMN_14870 0.84 +0.3
2,968,853 - hofP NIAGMN_14870 0.84 -1.4
2,968,853 - hofP NIAGMN_14870 0.84 -0.5
2,968,876 + -0.3
2,968,997 + hofQ NIAGMN_14875 0.11 -0.1
2,969,008 + hofQ NIAGMN_14875 0.12 +0.3
2,969,008 + hofQ NIAGMN_14875 0.12 +0.5
2,969,009 - hofQ NIAGMN_14875 0.12 -0.8
2,969,014 + hofQ NIAGMN_14875 0.13 -0.0
2,969,014 + hofQ NIAGMN_14875 0.13 +0.2
2,969,014 + hofQ NIAGMN_14875 0.13 -0.4
2,969,015 - hofQ NIAGMN_14875 0.13 -1.8
2,969,015 - hofQ NIAGMN_14875 0.13 +0.5
2,969,041 + hofQ NIAGMN_14875 0.15 +0.5
2,969,042 - hofQ NIAGMN_14875 0.15 +0.3
2,969,051 - hofQ NIAGMN_14875 0.16 +0.3

Or see this region's nucleotide sequence