Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13485

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwaaH and yibQ are separated by 5 nucleotidesyibQ and envC are separated by 3 nucleotides NIAGMN_13480: waaH - UDP-glucuronate:LPS(HepIII) glycosyltransferase, at 2,664,818 to 2,665,834 waaH NIAGMN_13485: yibQ - Uncharacterized protein YibQ, at 2,665,840 to 2,666,799 yibQ NIAGMN_13490: envC - murein hydrolase activator EnvC, at 2,666,803 to 2,668,062 envC Position (kb) 2665 2666 2667Strain fitness (log2 ratio) -2 -1 0 1 2at 2664.847 kb on + strandat 2664.858 kb on + strandat 2664.860 kb on + strandat 2664.861 kb on - strandat 2664.863 kb on - strandat 2665.079 kb on + strand, within waaHat 2665.079 kb on + strand, within waaHat 2665.079 kb on + strand, within waaHat 2665.079 kb on + strand, within waaHat 2665.080 kb on - strand, within waaHat 2665.080 kb on - strand, within waaHat 2665.080 kb on - strand, within waaHat 2665.113 kb on - strand, within waaHat 2665.124 kb on + strand, within waaHat 2665.124 kb on + strand, within waaHat 2665.124 kb on + strand, within waaHat 2665.125 kb on - strand, within waaHat 2665.125 kb on - strand, within waaHat 2665.254 kb on + strand, within waaHat 2665.254 kb on + strand, within waaHat 2665.255 kb on - strand, within waaHat 2665.255 kb on - strand, within waaHat 2665.255 kb on - strand, within waaHat 2665.342 kb on + strand, within waaHat 2665.343 kb on - strand, within waaHat 2665.360 kb on + strand, within waaHat 2665.417 kb on + strand, within waaHat 2665.452 kb on + strand, within waaHat 2665.534 kb on + strand, within waaHat 2665.702 kb on + strand, within waaHat 2665.715 kb on + strand, within waaHat 2665.715 kb on + strand, within waaHat 2665.715 kb on + strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.716 kb on - strand, within waaHat 2665.718 kb on - strand, within waaHat 2665.767 kb on + strandat 2665.768 kb on - strandat 2665.911 kb on - strandat 2665.945 kb on + strand, within yibQat 2665.946 kb on - strand, within yibQat 2665.949 kb on - strand, within yibQat 2665.966 kb on - strand, within yibQat 2665.971 kb on - strand, within yibQat 2665.982 kb on - strand, within yibQat 2666.061 kb on + strand, within yibQat 2666.061 kb on + strand, within yibQat 2666.061 kb on + strand, within yibQat 2666.061 kb on + strand, within yibQat 2666.067 kb on + strand, within yibQat 2666.068 kb on - strand, within yibQat 2666.068 kb on - strand, within yibQat 2666.112 kb on + strand, within yibQat 2666.113 kb on - strand, within yibQat 2666.113 kb on - strand, within yibQat 2666.130 kb on + strand, within yibQat 2666.131 kb on - strand, within yibQat 2666.132 kb on + strand, within yibQat 2666.133 kb on - strand, within yibQat 2666.146 kb on + strand, within yibQat 2666.147 kb on - strand, within yibQat 2666.147 kb on - strand, within yibQat 2666.328 kb on + strand, within yibQat 2666.331 kb on + strand, within yibQat 2666.331 kb on + strand, within yibQat 2666.332 kb on - strand, within yibQat 2666.357 kb on + strand, within yibQat 2666.367 kb on - strand, within yibQat 2666.397 kb on + strand, within yibQat 2666.410 kb on - strand, within yibQat 2666.453 kb on + strand, within yibQat 2666.454 kb on - strand, within yibQat 2666.454 kb on - strand, within yibQat 2666.481 kb on + strand, within yibQat 2666.482 kb on - strand, within yibQat 2666.523 kb on + strand, within yibQat 2666.638 kb on + strand, within yibQat 2666.653 kb on - strand, within yibQat 2666.781 kb on + strandat 2666.782 kb on - strandat 2666.804 kb on + strandat 2666.805 kb on - strandat 2666.862 kb on - strandat 2666.967 kb on - strand, within envCat 2667.064 kb on - strand, within envCat 2667.110 kb on - strand, within envCat 2667.110 kb on - strand, within envCat 2667.121 kb on + strand, within envCat 2667.122 kb on - strand, within envCat 2667.122 kb on - strand, within envCat 2667.122 kb on - strand, within envCat 2667.122 kb on - strand, within envCat 2667.122 kb on - strand, within envCat 2667.135 kb on - strand, within envCat 2667.135 kb on - strand, within envCat 2667.239 kb on + strand, within envCat 2667.240 kb on - strand, within envCat 2667.439 kb on - strand, within envCat 2667.489 kb on - strand, within envCat 2667.489 kb on - strand, within envCat 2667.490 kb on + strand, within envCat 2667.491 kb on - strand, within envCat 2667.491 kb on - strand, within envCat 2667.491 kb on - strand, within envCat 2667.491 kb on - strand, within envCat 2667.612 kb on - strand, within envC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,664,847 + -0.2
2,664,858 + +0.4
2,664,860 + -0.5
2,664,861 - -1.4
2,664,863 - +1.2
2,665,079 + waaH NIAGMN_13480 0.26 +0.1
2,665,079 + waaH NIAGMN_13480 0.26 -2.6
2,665,079 + waaH NIAGMN_13480 0.26 +0.7
2,665,079 + waaH NIAGMN_13480 0.26 +0.3
2,665,080 - waaH NIAGMN_13480 0.26 +0.5
2,665,080 - waaH NIAGMN_13480 0.26 -0.2
2,665,080 - waaH NIAGMN_13480 0.26 +0.6
2,665,113 - waaH NIAGMN_13480 0.29 +0.3
2,665,124 + waaH NIAGMN_13480 0.30 -0.1
2,665,124 + waaH NIAGMN_13480 0.30 +0.7
2,665,124 + waaH NIAGMN_13480 0.30 +1.0
2,665,125 - waaH NIAGMN_13480 0.30 +0.1
2,665,125 - waaH NIAGMN_13480 0.30 -0.8
2,665,254 + waaH NIAGMN_13480 0.43 +2.1
2,665,254 + waaH NIAGMN_13480 0.43 -0.0
2,665,255 - waaH NIAGMN_13480 0.43 -0.6
2,665,255 - waaH NIAGMN_13480 0.43 -0.5
2,665,255 - waaH NIAGMN_13480 0.43 +0.4
2,665,342 + waaH NIAGMN_13480 0.52 +0.7
2,665,343 - waaH NIAGMN_13480 0.52 -0.8
2,665,360 + waaH NIAGMN_13480 0.53 +0.1
2,665,417 + waaH NIAGMN_13480 0.59 -0.7
2,665,452 + waaH NIAGMN_13480 0.62 +1.0
2,665,534 + waaH NIAGMN_13480 0.70 -0.1
2,665,702 + waaH NIAGMN_13480 0.87 +0.7
2,665,715 + waaH NIAGMN_13480 0.88 -0.1
2,665,715 + waaH NIAGMN_13480 0.88 -0.2
2,665,715 + waaH NIAGMN_13480 0.88 +0.1
2,665,716 - waaH NIAGMN_13480 0.88 +0.4
2,665,716 - waaH NIAGMN_13480 0.88 +0.0
2,665,716 - waaH NIAGMN_13480 0.88 +0.0
2,665,716 - waaH NIAGMN_13480 0.88 +0.5
2,665,716 - waaH NIAGMN_13480 0.88 -0.2
2,665,716 - waaH NIAGMN_13480 0.88 +0.5
2,665,716 - waaH NIAGMN_13480 0.88 -1.2
2,665,716 - waaH NIAGMN_13480 0.88 +0.5
2,665,718 - waaH NIAGMN_13480 0.88 +0.2
2,665,767 + +0.2
2,665,768 - -0.8
2,665,911 - -0.1
2,665,945 + yibQ NIAGMN_13485 0.11 +0.3
2,665,946 - yibQ NIAGMN_13485 0.11 -0.1
2,665,949 - yibQ NIAGMN_13485 0.11 -0.0
2,665,966 - yibQ NIAGMN_13485 0.13 -1.4
2,665,971 - yibQ NIAGMN_13485 0.14 +0.7
2,665,982 - yibQ NIAGMN_13485 0.15 +0.1
2,666,061 + yibQ NIAGMN_13485 0.23 +0.9
2,666,061 + yibQ NIAGMN_13485 0.23 -1.0
2,666,061 + yibQ NIAGMN_13485 0.23 -0.6
2,666,061 + yibQ NIAGMN_13485 0.23 -0.3
2,666,067 + yibQ NIAGMN_13485 0.24 -1.0
2,666,068 - yibQ NIAGMN_13485 0.24 +0.7
2,666,068 - yibQ NIAGMN_13485 0.24 +0.4
2,666,112 + yibQ NIAGMN_13485 0.28 -0.2
2,666,113 - yibQ NIAGMN_13485 0.28 +0.9
2,666,113 - yibQ NIAGMN_13485 0.28 -0.4
2,666,130 + yibQ NIAGMN_13485 0.30 -0.2
2,666,131 - yibQ NIAGMN_13485 0.30 -1.5
2,666,132 + yibQ NIAGMN_13485 0.30 +0.5
2,666,133 - yibQ NIAGMN_13485 0.31 +0.3
2,666,146 + yibQ NIAGMN_13485 0.32 -0.0
2,666,147 - yibQ NIAGMN_13485 0.32 -0.1
2,666,147 - yibQ NIAGMN_13485 0.32 -0.8
2,666,328 + yibQ NIAGMN_13485 0.51 -1.0
2,666,331 + yibQ NIAGMN_13485 0.51 -1.2
2,666,331 + yibQ NIAGMN_13485 0.51 +0.1
2,666,332 - yibQ NIAGMN_13485 0.51 -2.5
2,666,357 + yibQ NIAGMN_13485 0.54 +1.7
2,666,367 - yibQ NIAGMN_13485 0.55 +0.3
2,666,397 + yibQ NIAGMN_13485 0.58 -0.9
2,666,410 - yibQ NIAGMN_13485 0.59 -0.3
2,666,453 + yibQ NIAGMN_13485 0.64 -0.5
2,666,454 - yibQ NIAGMN_13485 0.64 +0.2
2,666,454 - yibQ NIAGMN_13485 0.64 -0.1
2,666,481 + yibQ NIAGMN_13485 0.67 -0.4
2,666,482 - yibQ NIAGMN_13485 0.67 +0.1
2,666,523 + yibQ NIAGMN_13485 0.71 -0.1
2,666,638 + yibQ NIAGMN_13485 0.83 -0.2
2,666,653 - yibQ NIAGMN_13485 0.85 +0.7
2,666,781 + +0.3
2,666,782 - -0.2
2,666,804 + +0.9
2,666,805 - -2.5
2,666,862 - -0.1
2,666,967 - envC NIAGMN_13490 0.13 -1.1
2,667,064 - envC NIAGMN_13490 0.21 -0.4
2,667,110 - envC NIAGMN_13490 0.24 -0.6
2,667,110 - envC NIAGMN_13490 0.24 +1.1
2,667,121 + envC NIAGMN_13490 0.25 +0.3
2,667,122 - envC NIAGMN_13490 0.25 -1.5
2,667,122 - envC NIAGMN_13490 0.25 -0.2
2,667,122 - envC NIAGMN_13490 0.25 -0.6
2,667,122 - envC NIAGMN_13490 0.25 +0.0
2,667,122 - envC NIAGMN_13490 0.25 -1.3
2,667,135 - envC NIAGMN_13490 0.26 -2.2
2,667,135 - envC NIAGMN_13490 0.26 -1.1
2,667,239 + envC NIAGMN_13490 0.35 -0.5
2,667,240 - envC NIAGMN_13490 0.35 +0.4
2,667,439 - envC NIAGMN_13490 0.50 -0.8
2,667,489 - envC NIAGMN_13490 0.54 -2.0
2,667,489 - envC NIAGMN_13490 0.54 -0.5
2,667,490 + envC NIAGMN_13490 0.55 -1.6
2,667,491 - envC NIAGMN_13490 0.55 -0.4
2,667,491 - envC NIAGMN_13490 0.55 -0.2
2,667,491 - envC NIAGMN_13490 0.55 +0.0
2,667,491 - envC NIAGMN_13490 0.55 -0.7
2,667,612 - envC NIAGMN_13490 0.64 +0.4

Or see this region's nucleotide sequence