Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyaA and hemC are separated by 365 nucleotides hemC and hemD overlap by 4 nucleotides hemD and hemX are separated by 21 nucleotides
NIAGMN_12200: cyaA - class I adenylate cyclase, at 2,414,367 to 2,416,913
cyaA
NIAGMN_12205: hemC - hydroxymethylbilane synthase, at 2,417,279 to 2,418,241
hemC
NIAGMN_12210: hemD - uroporphyrinogen-III synthase, at 2,418,238 to 2,418,978
hemD
NIAGMN_12215: hemX - uroporphyrinogen-III C-methyltransferase, at 2,419,000 to 2,420,205
hemX
Position (kb)
2417
2418
2419 Strain fitness (log2 ratio)
-2
-1
0
1 at 2416.970 kb on - strand at 2416.996 kb on - strand at 2416.996 kb on - strand at 2417.079 kb on - strand at 2417.100 kb on - strand at 2417.100 kb on - strand at 2417.114 kb on + strand at 2417.114 kb on + strand at 2417.115 kb on - strand at 2417.115 kb on - strand at 2417.115 kb on - strand at 2417.115 kb on - strand at 2417.115 kb on - strand at 2417.118 kb on + strand at 2417.118 kb on + strand at 2417.118 kb on + strand at 2417.118 kb on + strand at 2417.118 kb on + strand at 2417.119 kb on - strand at 2417.119 kb on - strand at 2417.119 kb on - strand at 2417.119 kb on - strand at 2417.126 kb on + strand at 2417.126 kb on + strand at 2417.126 kb on + strand at 2417.126 kb on + strand at 2417.126 kb on + strand at 2417.126 kb on + strand at 2417.127 kb on - strand at 2417.127 kb on - strand at 2417.127 kb on - strand at 2417.127 kb on - strand at 2417.157 kb on + strand at 2417.157 kb on + strand at 2417.158 kb on - strand at 2417.204 kb on + strand at 2417.205 kb on - strand at 2417.223 kb on + strand at 2417.264 kb on + strand at 2417.284 kb on - strand at 2418.218 kb on + strand at 2418.218 kb on + strand at 2418.218 kb on + strand at 2418.218 kb on + strand at 2418.962 kb on + strand at 2418.971 kb on + strand at 2418.971 kb on + strand at 2418.971 kb on + strand at 2418.971 kb on + strand at 2418.971 kb on + strand at 2418.971 kb on + strand at 2418.972 kb on - strand at 2418.972 kb on - strand at 2418.972 kb on - strand at 2418.977 kb on - strand at 2418.977 kb on - strand at 2418.977 kb on - strand at 2418.977 kb on - strand at 2418.977 kb on - strand at 2418.985 kb on + strand at 2418.986 kb on - strand at 2418.986 kb on - strand at 2418.986 kb on - strand at 2419.092 kb on + strand at 2419.134 kb on + strand, within hemX at 2419.162 kb on + strand, within hemX at 2419.162 kb on + strand, within hemX
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,416,970 - -1.1 2,416,996 - -2.0 2,416,996 - +0.4 2,417,079 - +0.1 2,417,100 - -1.1 2,417,100 - +0.5 2,417,114 + +0.2 2,417,114 + +0.1 2,417,115 - -0.3 2,417,115 - -0.3 2,417,115 - -0.9 2,417,115 - +0.6 2,417,115 - +0.4 2,417,118 + +0.1 2,417,118 + -0.7 2,417,118 + -0.1 2,417,118 + +0.6 2,417,118 + +0.3 2,417,119 - +0.1 2,417,119 - -0.8 2,417,119 - -0.5 2,417,119 - +0.6 2,417,126 + -0.3 2,417,126 + -0.8 2,417,126 + +0.6 2,417,126 + +1.0 2,417,126 + -0.6 2,417,126 + +1.4 2,417,127 - +0.2 2,417,127 - +1.0 2,417,127 - +0.4 2,417,127 - +0.7 2,417,157 + -0.1 2,417,157 + -1.7 2,417,158 - +0.1 2,417,204 + +0.8 2,417,205 - -0.2 2,417,223 + -0.5 2,417,264 + -0.1 2,417,284 - +0.4 2,418,218 + -0.9 2,418,218 + -0.5 2,418,218 + +0.2 2,418,218 + -1.6 2,418,962 + -0.5 2,418,971 + -0.6 2,418,971 + +0.6 2,418,971 + +0.7 2,418,971 + +0.1 2,418,971 + -0.7 2,418,971 + -0.2 2,418,972 - -1.7 2,418,972 - +0.5 2,418,972 - -0.3 2,418,977 - +0.7 2,418,977 - -1.1 2,418,977 - -1.7 2,418,977 - -1.0 2,418,977 - +1.4 2,418,985 + -0.0 2,418,986 - -0.8 2,418,986 - -0.9 2,418,986 - -0.5 2,419,092 + +0.4 2,419,134 + hemX NIAGMN_12215 0.11 -0.5 2,419,162 + hemX NIAGMN_12215 0.13 -0.1 2,419,162 + hemX NIAGMN_12215 0.13 +0.5
Or see this region's nucleotide sequence