Strain Fitness in Escherichia coli ECRC102 around NIAGMN_12205

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcyaA and hemC are separated by 365 nucleotideshemC and hemD overlap by 4 nucleotideshemD and hemX are separated by 21 nucleotides NIAGMN_12200: cyaA - class I adenylate cyclase, at 2,414,367 to 2,416,913 cyaA NIAGMN_12205: hemC - hydroxymethylbilane synthase, at 2,417,279 to 2,418,241 hemC NIAGMN_12210: hemD - uroporphyrinogen-III synthase, at 2,418,238 to 2,418,978 hemD NIAGMN_12215: hemX - uroporphyrinogen-III C-methyltransferase, at 2,419,000 to 2,420,205 hemX Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -2 -1 0 1at 2416.970 kb on - strandat 2416.996 kb on - strandat 2416.996 kb on - strandat 2417.079 kb on - strandat 2417.100 kb on - strandat 2417.100 kb on - strandat 2417.114 kb on + strandat 2417.114 kb on + strandat 2417.115 kb on - strandat 2417.115 kb on - strandat 2417.115 kb on - strandat 2417.115 kb on - strandat 2417.115 kb on - strandat 2417.118 kb on + strandat 2417.118 kb on + strandat 2417.118 kb on + strandat 2417.118 kb on + strandat 2417.118 kb on + strandat 2417.119 kb on - strandat 2417.119 kb on - strandat 2417.119 kb on - strandat 2417.119 kb on - strandat 2417.126 kb on + strandat 2417.126 kb on + strandat 2417.126 kb on + strandat 2417.126 kb on + strandat 2417.126 kb on + strandat 2417.126 kb on + strandat 2417.127 kb on - strandat 2417.127 kb on - strandat 2417.127 kb on - strandat 2417.127 kb on - strandat 2417.157 kb on + strandat 2417.157 kb on + strandat 2417.158 kb on - strandat 2417.204 kb on + strandat 2417.205 kb on - strandat 2417.223 kb on + strandat 2417.264 kb on + strandat 2417.284 kb on - strandat 2418.218 kb on + strandat 2418.218 kb on + strandat 2418.218 kb on + strandat 2418.218 kb on + strandat 2418.962 kb on + strandat 2418.971 kb on + strandat 2418.971 kb on + strandat 2418.971 kb on + strandat 2418.971 kb on + strandat 2418.971 kb on + strandat 2418.971 kb on + strandat 2418.972 kb on - strandat 2418.972 kb on - strandat 2418.972 kb on - strandat 2418.977 kb on - strandat 2418.977 kb on - strandat 2418.977 kb on - strandat 2418.977 kb on - strandat 2418.977 kb on - strandat 2418.985 kb on + strandat 2418.986 kb on - strandat 2418.986 kb on - strandat 2418.986 kb on - strandat 2419.092 kb on + strandat 2419.134 kb on + strand, within hemXat 2419.162 kb on + strand, within hemXat 2419.162 kb on + strand, within hemX

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,416,970 - -1.1
2,416,996 - -2.0
2,416,996 - +0.4
2,417,079 - +0.1
2,417,100 - -1.1
2,417,100 - +0.5
2,417,114 + +0.2
2,417,114 + +0.1
2,417,115 - -0.3
2,417,115 - -0.3
2,417,115 - -0.9
2,417,115 - +0.6
2,417,115 - +0.4
2,417,118 + +0.1
2,417,118 + -0.7
2,417,118 + -0.1
2,417,118 + +0.6
2,417,118 + +0.3
2,417,119 - +0.1
2,417,119 - -0.8
2,417,119 - -0.5
2,417,119 - +0.6
2,417,126 + -0.3
2,417,126 + -0.8
2,417,126 + +0.6
2,417,126 + +1.0
2,417,126 + -0.6
2,417,126 + +1.4
2,417,127 - +0.2
2,417,127 - +1.0
2,417,127 - +0.4
2,417,127 - +0.7
2,417,157 + -0.1
2,417,157 + -1.7
2,417,158 - +0.1
2,417,204 + +0.8
2,417,205 - -0.2
2,417,223 + -0.5
2,417,264 + -0.1
2,417,284 - +0.4
2,418,218 + -0.9
2,418,218 + -0.5
2,418,218 + +0.2
2,418,218 + -1.6
2,418,962 + -0.5
2,418,971 + -0.6
2,418,971 + +0.6
2,418,971 + +0.7
2,418,971 + +0.1
2,418,971 + -0.7
2,418,971 + -0.2
2,418,972 - -1.7
2,418,972 - +0.5
2,418,972 - -0.3
2,418,977 - +0.7
2,418,977 - -1.1
2,418,977 - -1.7
2,418,977 - -1.0
2,418,977 - +1.4
2,418,985 + -0.0
2,418,986 - -0.8
2,418,986 - -0.9
2,418,986 - -0.5
2,419,092 + +0.4
2,419,134 + hemX NIAGMN_12215 0.11 -0.5
2,419,162 + hemX NIAGMN_12215 0.13 -0.1
2,419,162 + hemX NIAGMN_12215 0.13 +0.5

Or see this region's nucleotide sequence