Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11055

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt23S_rrna and Glu_trna are separated by 193 nucleotidesGlu_trna and 16S_rrna are separated by 85 nucleotides16S_rrna and purH are separated by 616 nucleotides NIAGMN_11040: 23S_rrna - 23S ribosomal RNA, at 2,179,971 to 2,182,875 _rrna NIAGMN_11050: Glu_trna - tRNA-Glu(ttc), at 2,183,069 to 2,183,144 _trna NIAGMN_11055: 16S_rrna - 16S ribosomal RNA, at 2,183,230 to 2,184,771 _rrna NIAGMN_11060: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 2,185,388 to 2,186,977 purH Position (kb) 2183 2184 2185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2185.070 kb on + strandat 2185.149 kb on + strandat 2185.149 kb on + strandat 2185.150 kb on - strandat 2185.150 kb on - strandat 2185.159 kb on + strandat 2185.190 kb on + strandat 2185.190 kb on + strandat 2185.191 kb on - strandat 2185.299 kb on + strandat 2185.299 kb on + strandat 2185.300 kb on - strandat 2185.322 kb on + strandat 2185.350 kb on + strandat 2185.350 kb on + strandat 2185.350 kb on + strandat 2185.363 kb on - strandat 2185.363 kb on - strandat 2185.363 kb on - strandat 2185.366 kb on - strandat 2185.366 kb on - strandat 2185.366 kb on - strandat 2185.366 kb on - strandat 2185.384 kb on + strandat 2185.385 kb on - strandat 2185.385 kb on - strandat 2185.385 kb on - strandat 2185.556 kb on + strand, within purHat 2185.611 kb on + strand, within purHat 2185.611 kb on + strand, within purHat 2185.612 kb on - strand, within purHat 2185.612 kb on - strand, within purHat 2185.612 kb on - strand, within purHat 2185.612 kb on - strand, within purHat 2185.612 kb on - strand, within purHat 2185.685 kb on - strand, within purHat 2185.704 kb on - strand, within purH

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,185,070 + +0.5
2,185,149 + +0.3
2,185,149 + +0.1
2,185,150 - +0.1
2,185,150 - -0.7
2,185,159 + +0.2
2,185,190 + -1.7
2,185,190 + +0.1
2,185,191 - -0.1
2,185,299 + +0.8
2,185,299 + -0.2
2,185,300 - -0.3
2,185,322 + +1.5
2,185,350 + -0.9
2,185,350 + +1.3
2,185,350 + +0.5
2,185,363 - -0.6
2,185,363 - -1.7
2,185,363 - -0.7
2,185,366 - -3.5
2,185,366 - -2.2
2,185,366 - -0.8
2,185,366 - -1.0
2,185,384 + -2.6
2,185,385 - -4.2
2,185,385 - -4.4
2,185,385 - -3.1
2,185,556 + purH NIAGMN_11060 0.11 -1.4
2,185,611 + purH NIAGMN_11060 0.14 -3.3
2,185,611 + purH NIAGMN_11060 0.14 -0.2
2,185,612 - purH NIAGMN_11060 0.14 -1.6
2,185,612 - purH NIAGMN_11060 0.14 -1.9
2,185,612 - purH NIAGMN_11060 0.14 -0.7
2,185,612 - purH NIAGMN_11060 0.14 -2.9
2,185,612 - purH NIAGMN_11060 0.14 -2.6
2,185,685 - purH NIAGMN_11060 0.19 -2.5
2,185,704 - purH NIAGMN_11060 0.20 -3.7

Or see this region's nucleotide sequence