Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbsB and ydaE are separated by 54 nucleotides ydaE and fba are separated by 14 nucleotides fba and rbsK overlap by 4 nucleotides
NIAGMN_10565: rbsB - transcriptional regulator, at 2,076,655 to 2,077,596
rbsB
NIAGMN_10570: ydaE - D-lyxose/D-mannose isomerase, at 2,077,651 to 2,078,334
ydaE
NIAGMN_10575: fba - ketose 1,6-bisphosphate aldolase, at 2,078,349 to 2,079,209
fba
NIAGMN_10580: rbsK - sugar kinase, at 2,079,206 to 2,080,207
rbsK
Position (kb)
2077
2078
2079 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2076.744 kb on - strand at 2076.744 kb on - strand at 2076.863 kb on - strand, within rbsB at 2076.909 kb on + strand, within rbsB at 2076.919 kb on - strand, within rbsB at 2077.011 kb on - strand, within rbsB at 2077.074 kb on + strand, within rbsB at 2077.078 kb on + strand, within rbsB at 2077.078 kb on + strand, within rbsB at 2077.079 kb on - strand, within rbsB at 2077.079 kb on - strand, within rbsB at 2077.079 kb on - strand, within rbsB at 2077.079 kb on - strand, within rbsB at 2077.079 kb on - strand, within rbsB at 2077.253 kb on + strand, within rbsB at 2077.253 kb on + strand, within rbsB at 2077.253 kb on + strand, within rbsB at 2077.253 kb on + strand, within rbsB at 2077.254 kb on - strand, within rbsB at 2077.254 kb on - strand, within rbsB at 2077.296 kb on - strand, within rbsB at 2077.306 kb on - strand, within rbsB at 2077.368 kb on + strand, within rbsB at 2077.369 kb on - strand, within rbsB at 2077.573 kb on + strand at 2077.574 kb on - strand at 2077.574 kb on - strand at 2077.574 kb on - strand at 2077.594 kb on + strand at 2077.594 kb on + strand at 2077.594 kb on + strand at 2077.594 kb on + strand at 2077.594 kb on + strand at 2077.594 kb on + strand at 2077.595 kb on - strand at 2077.595 kb on - strand at 2077.595 kb on - strand at 2077.595 kb on - strand at 2077.595 kb on - strand at 2077.687 kb on - strand at 2077.687 kb on - strand at 2077.715 kb on + strand at 2077.715 kb on + strand at 2077.715 kb on + strand at 2077.716 kb on - strand at 2077.716 kb on - strand at 2077.716 kb on - strand at 2077.716 kb on - strand at 2077.716 kb on - strand at 2077.716 kb on - strand at 2077.798 kb on - strand, within ydaE at 2077.798 kb on - strand, within ydaE at 2077.864 kb on - strand, within ydaE at 2077.868 kb on + strand, within ydaE at 2077.868 kb on + strand, within ydaE at 2077.869 kb on - strand, within ydaE at 2077.873 kb on - strand, within ydaE at 2077.897 kb on + strand, within ydaE at 2077.897 kb on + strand, within ydaE at 2077.898 kb on - strand, within ydaE at 2077.898 kb on - strand, within ydaE at 2077.910 kb on - strand, within ydaE at 2077.972 kb on - strand, within ydaE at 2077.986 kb on + strand, within ydaE at 2077.986 kb on + strand, within ydaE at 2078.009 kb on + strand, within ydaE at 2078.009 kb on + strand, within ydaE at 2078.009 kb on + strand, within ydaE at 2078.009 kb on + strand, within ydaE at 2078.009 kb on + strand, within ydaE at 2078.034 kb on + strand, within ydaE at 2078.037 kb on + strand, within ydaE at 2078.038 kb on - strand, within ydaE at 2078.038 kb on - strand, within ydaE at 2078.038 kb on - strand, within ydaE at 2078.055 kb on + strand, within ydaE at 2078.055 kb on + strand, within ydaE at 2078.055 kb on + strand, within ydaE at 2078.056 kb on - strand, within ydaE at 2078.064 kb on + strand, within ydaE at 2078.065 kb on - strand, within ydaE at 2078.075 kb on + strand, within ydaE at 2078.076 kb on - strand, within ydaE at 2078.076 kb on - strand, within ydaE at 2078.097 kb on + strand, within ydaE at 2078.097 kb on + strand, within ydaE at 2078.097 kb on + strand, within ydaE at 2078.098 kb on - strand, within ydaE at 2078.098 kb on - strand, within ydaE at 2078.136 kb on + strand, within ydaE at 2078.137 kb on - strand, within ydaE at 2078.137 kb on - strand, within ydaE at 2078.159 kb on - strand, within ydaE at 2078.159 kb on - strand, within ydaE at 2078.220 kb on + strand, within ydaE at 2078.303 kb on + strand at 2078.310 kb on + strand at 2078.311 kb on - strand at 2078.336 kb on + strand at 2078.349 kb on - strand at 2078.408 kb on - strand at 2078.483 kb on + strand, within fba at 2078.483 kb on + strand, within fba at 2078.483 kb on + strand, within fba at 2078.486 kb on + strand, within fba at 2078.504 kb on - strand, within fba at 2078.511 kb on - strand, within fba at 2078.514 kb on + strand, within fba at 2078.515 kb on - strand, within fba at 2078.516 kb on + strand, within fba at 2078.516 kb on + strand, within fba at 2078.516 kb on + strand, within fba at 2078.516 kb on + strand, within fba at 2078.517 kb on - strand, within fba at 2078.517 kb on - strand, within fba at 2078.517 kb on - strand, within fba at 2078.584 kb on + strand, within fba at 2078.584 kb on + strand, within fba at 2078.585 kb on - strand, within fba at 2078.585 kb on - strand, within fba at 2078.602 kb on + strand, within fba at 2078.602 kb on + strand, within fba at 2078.603 kb on - strand, within fba at 2078.651 kb on - strand, within fba at 2078.677 kb on - strand, within fba at 2078.740 kb on + strand, within fba at 2078.740 kb on + strand, within fba at 2078.740 kb on + strand, within fba at 2078.787 kb on + strand, within fba at 2078.787 kb on + strand, within fba at 2078.787 kb on + strand, within fba at 2078.787 kb on + strand, within fba at 2078.813 kb on + strand, within fba at 2078.968 kb on + strand, within fba at 2078.968 kb on + strand, within fba at 2078.968 kb on + strand, within fba at 2078.969 kb on - strand, within fba at 2078.969 kb on - strand, within fba at 2078.972 kb on - strand, within fba at 2078.990 kb on + strand, within fba at 2079.045 kb on + strand, within fba at 2079.045 kb on + strand, within fba at 2079.046 kb on - strand, within fba at 2079.046 kb on - strand, within fba at 2079.111 kb on + strand, within fba at 2079.112 kb on - strand, within fba at 2079.112 kb on - strand, within fba at 2079.131 kb on - strand at 2079.182 kb on + strand at 2079.241 kb on + strand at 2079.241 kb on + strand at 2079.241 kb on + strand at 2079.241 kb on + strand at 2079.241 kb on + strand at 2079.241 kb on + strand at 2079.242 kb on - strand at 2079.242 kb on - strand at 2079.242 kb on - strand at 2079.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,076,744 - +0.1 2,076,744 - -0.2 2,076,863 - rbsB NIAGMN_10565 0.22 -0.2 2,076,909 + rbsB NIAGMN_10565 0.27 +1.2 2,076,919 - rbsB NIAGMN_10565 0.28 +0.2 2,077,011 - rbsB NIAGMN_10565 0.38 +0.3 2,077,074 + rbsB NIAGMN_10565 0.44 -0.5 2,077,078 + rbsB NIAGMN_10565 0.45 -0.3 2,077,078 + rbsB NIAGMN_10565 0.45 -0.9 2,077,079 - rbsB NIAGMN_10565 0.45 +0.1 2,077,079 - rbsB NIAGMN_10565 0.45 -0.6 2,077,079 - rbsB NIAGMN_10565 0.45 -0.3 2,077,079 - rbsB NIAGMN_10565 0.45 -0.0 2,077,079 - rbsB NIAGMN_10565 0.45 +1.1 2,077,253 + rbsB NIAGMN_10565 0.63 +1.8 2,077,253 + rbsB NIAGMN_10565 0.63 +0.3 2,077,253 + rbsB NIAGMN_10565 0.63 -0.7 2,077,253 + rbsB NIAGMN_10565 0.63 -0.2 2,077,254 - rbsB NIAGMN_10565 0.64 -0.1 2,077,254 - rbsB NIAGMN_10565 0.64 -0.2 2,077,296 - rbsB NIAGMN_10565 0.68 -1.6 2,077,306 - rbsB NIAGMN_10565 0.69 -0.5 2,077,368 + rbsB NIAGMN_10565 0.76 +0.6 2,077,369 - rbsB NIAGMN_10565 0.76 +0.7 2,077,573 + +2.2 2,077,574 - -0.1 2,077,574 - -0.1 2,077,574 - +0.1 2,077,594 + -0.1 2,077,594 + +0.8 2,077,594 + -0.0 2,077,594 + +1.4 2,077,594 + +0.4 2,077,594 + -0.3 2,077,595 - +0.3 2,077,595 - +0.8 2,077,595 - +0.4 2,077,595 - +0.8 2,077,595 - +0.0 2,077,687 - +1.7 2,077,687 - -0.6 2,077,715 + -0.9 2,077,715 + -0.2 2,077,715 + +0.8 2,077,716 - -0.2 2,077,716 - -1.3 2,077,716 - +1.1 2,077,716 - -0.2 2,077,716 - -0.5 2,077,716 - +1.1 2,077,798 - ydaE NIAGMN_10570 0.21 +0.4 2,077,798 - ydaE NIAGMN_10570 0.21 -1.2 2,077,864 - ydaE NIAGMN_10570 0.31 -0.1 2,077,868 + ydaE NIAGMN_10570 0.32 +0.6 2,077,868 + ydaE NIAGMN_10570 0.32 +0.9 2,077,869 - ydaE NIAGMN_10570 0.32 -1.6 2,077,873 - ydaE NIAGMN_10570 0.32 -3.2 2,077,897 + ydaE NIAGMN_10570 0.36 +0.4 2,077,897 + ydaE NIAGMN_10570 0.36 +0.2 2,077,898 - ydaE NIAGMN_10570 0.36 +1.0 2,077,898 - ydaE NIAGMN_10570 0.36 +0.6 2,077,910 - ydaE NIAGMN_10570 0.38 +1.2 2,077,972 - ydaE NIAGMN_10570 0.47 -0.4 2,077,986 + ydaE NIAGMN_10570 0.49 -1.5 2,077,986 + ydaE NIAGMN_10570 0.49 -0.3 2,078,009 + ydaE NIAGMN_10570 0.52 -0.7 2,078,009 + ydaE NIAGMN_10570 0.52 -0.0 2,078,009 + ydaE NIAGMN_10570 0.52 +0.2 2,078,009 + ydaE NIAGMN_10570 0.52 +0.9 2,078,009 + ydaE NIAGMN_10570 0.52 +0.2 2,078,034 + ydaE NIAGMN_10570 0.56 -0.7 2,078,037 + ydaE NIAGMN_10570 0.56 +0.2 2,078,038 - ydaE NIAGMN_10570 0.57 +0.4 2,078,038 - ydaE NIAGMN_10570 0.57 +0.0 2,078,038 - ydaE NIAGMN_10570 0.57 +0.3 2,078,055 + ydaE NIAGMN_10570 0.59 +0.4 2,078,055 + ydaE NIAGMN_10570 0.59 -0.3 2,078,055 + ydaE NIAGMN_10570 0.59 +0.2 2,078,056 - ydaE NIAGMN_10570 0.59 -0.0 2,078,064 + ydaE NIAGMN_10570 0.60 -0.0 2,078,065 - ydaE NIAGMN_10570 0.61 -1.2 2,078,075 + ydaE NIAGMN_10570 0.62 +0.8 2,078,076 - ydaE NIAGMN_10570 0.62 -0.1 2,078,076 - ydaE NIAGMN_10570 0.62 +0.3 2,078,097 + ydaE NIAGMN_10570 0.65 +0.3 2,078,097 + ydaE NIAGMN_10570 0.65 -0.9 2,078,097 + ydaE NIAGMN_10570 0.65 +0.5 2,078,098 - ydaE NIAGMN_10570 0.65 +0.4 2,078,098 - ydaE NIAGMN_10570 0.65 -1.3 2,078,136 + ydaE NIAGMN_10570 0.71 +0.0 2,078,137 - ydaE NIAGMN_10570 0.71 +1.0 2,078,137 - ydaE NIAGMN_10570 0.71 -0.1 2,078,159 - ydaE NIAGMN_10570 0.74 -0.3 2,078,159 - ydaE NIAGMN_10570 0.74 -1.0 2,078,220 + ydaE NIAGMN_10570 0.83 -0.2 2,078,303 + -0.7 2,078,310 + +0.6 2,078,311 - +0.9 2,078,336 + +0.0 2,078,349 - +0.6 2,078,408 - +0.3 2,078,483 + fba NIAGMN_10575 0.16 -0.2 2,078,483 + fba NIAGMN_10575 0.16 -0.5 2,078,483 + fba NIAGMN_10575 0.16 -0.9 2,078,486 + fba NIAGMN_10575 0.16 -0.2 2,078,504 - fba NIAGMN_10575 0.18 -1.4 2,078,511 - fba NIAGMN_10575 0.19 -1.2 2,078,514 + fba NIAGMN_10575 0.19 -0.6 2,078,515 - fba NIAGMN_10575 0.19 -0.0 2,078,516 + fba NIAGMN_10575 0.19 -0.6 2,078,516 + fba NIAGMN_10575 0.19 +1.6 2,078,516 + fba NIAGMN_10575 0.19 +0.1 2,078,516 + fba NIAGMN_10575 0.19 +0.5 2,078,517 - fba NIAGMN_10575 0.20 +0.5 2,078,517 - fba NIAGMN_10575 0.20 +0.1 2,078,517 - fba NIAGMN_10575 0.20 +0.7 2,078,584 + fba NIAGMN_10575 0.27 +0.6 2,078,584 + fba NIAGMN_10575 0.27 +0.3 2,078,585 - fba NIAGMN_10575 0.27 -0.5 2,078,585 - fba NIAGMN_10575 0.27 -0.3 2,078,602 + fba NIAGMN_10575 0.29 -0.4 2,078,602 + fba NIAGMN_10575 0.29 -0.1 2,078,603 - fba NIAGMN_10575 0.30 -0.6 2,078,651 - fba NIAGMN_10575 0.35 +0.1 2,078,677 - fba NIAGMN_10575 0.38 -0.1 2,078,740 + fba NIAGMN_10575 0.45 +0.4 2,078,740 + fba NIAGMN_10575 0.45 +0.7 2,078,740 + fba NIAGMN_10575 0.45 -1.9 2,078,787 + fba NIAGMN_10575 0.51 -1.5 2,078,787 + fba NIAGMN_10575 0.51 -0.3 2,078,787 + fba NIAGMN_10575 0.51 +0.1 2,078,787 + fba NIAGMN_10575 0.51 +0.1 2,078,813 + fba NIAGMN_10575 0.54 +0.2 2,078,968 + fba NIAGMN_10575 0.72 -0.5 2,078,968 + fba NIAGMN_10575 0.72 +0.7 2,078,968 + fba NIAGMN_10575 0.72 +1.4 2,078,969 - fba NIAGMN_10575 0.72 -0.3 2,078,969 - fba NIAGMN_10575 0.72 +0.3 2,078,972 - fba NIAGMN_10575 0.72 -0.0 2,078,990 + fba NIAGMN_10575 0.74 +0.1 2,079,045 + fba NIAGMN_10575 0.81 +0.4 2,079,045 + fba NIAGMN_10575 0.81 -0.2 2,079,046 - fba NIAGMN_10575 0.81 -0.2 2,079,046 - fba NIAGMN_10575 0.81 +0.7 2,079,111 + fba NIAGMN_10575 0.89 +0.3 2,079,112 - fba NIAGMN_10575 0.89 -0.1 2,079,112 - fba NIAGMN_10575 0.89 -0.7 2,079,131 - +0.4 2,079,182 + +1.9 2,079,241 + -0.2 2,079,241 + -0.2 2,079,241 + +0.3 2,079,241 + -0.3 2,079,241 + +0.2 2,079,241 + -0.3 2,079,242 - +0.3 2,079,242 - -0.4 2,079,242 - -0.7 2,079,268 + -0.5
Or see this region's nucleotide sequence