Strain Fitness in Escherichia coli ECRC102 around NIAGMN_10570

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrbsB and ydaE are separated by 54 nucleotidesydaE and fba are separated by 14 nucleotidesfba and rbsK overlap by 4 nucleotides NIAGMN_10565: rbsB - transcriptional regulator, at 2,076,655 to 2,077,596 rbsB NIAGMN_10570: ydaE - D-lyxose/D-mannose isomerase, at 2,077,651 to 2,078,334 ydaE NIAGMN_10575: fba - ketose 1,6-bisphosphate aldolase, at 2,078,349 to 2,079,209 fba NIAGMN_10580: rbsK - sugar kinase, at 2,079,206 to 2,080,207 rbsK Position (kb) 2077 2078 2079Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2076.744 kb on - strandat 2076.744 kb on - strandat 2076.863 kb on - strand, within rbsBat 2076.909 kb on + strand, within rbsBat 2076.919 kb on - strand, within rbsBat 2077.011 kb on - strand, within rbsBat 2077.074 kb on + strand, within rbsBat 2077.078 kb on + strand, within rbsBat 2077.078 kb on + strand, within rbsBat 2077.079 kb on - strand, within rbsBat 2077.079 kb on - strand, within rbsBat 2077.079 kb on - strand, within rbsBat 2077.079 kb on - strand, within rbsBat 2077.079 kb on - strand, within rbsBat 2077.253 kb on + strand, within rbsBat 2077.253 kb on + strand, within rbsBat 2077.253 kb on + strand, within rbsBat 2077.253 kb on + strand, within rbsBat 2077.254 kb on - strand, within rbsBat 2077.254 kb on - strand, within rbsBat 2077.296 kb on - strand, within rbsBat 2077.306 kb on - strand, within rbsBat 2077.368 kb on + strand, within rbsBat 2077.369 kb on - strand, within rbsBat 2077.573 kb on + strandat 2077.574 kb on - strandat 2077.574 kb on - strandat 2077.574 kb on - strandat 2077.594 kb on + strandat 2077.594 kb on + strandat 2077.594 kb on + strandat 2077.594 kb on + strandat 2077.594 kb on + strandat 2077.594 kb on + strandat 2077.595 kb on - strandat 2077.595 kb on - strandat 2077.595 kb on - strandat 2077.595 kb on - strandat 2077.595 kb on - strandat 2077.687 kb on - strandat 2077.687 kb on - strandat 2077.715 kb on + strandat 2077.715 kb on + strandat 2077.715 kb on + strandat 2077.716 kb on - strandat 2077.716 kb on - strandat 2077.716 kb on - strandat 2077.716 kb on - strandat 2077.716 kb on - strandat 2077.716 kb on - strandat 2077.798 kb on - strand, within ydaEat 2077.798 kb on - strand, within ydaEat 2077.864 kb on - strand, within ydaEat 2077.868 kb on + strand, within ydaEat 2077.868 kb on + strand, within ydaEat 2077.869 kb on - strand, within ydaEat 2077.873 kb on - strand, within ydaEat 2077.897 kb on + strand, within ydaEat 2077.897 kb on + strand, within ydaEat 2077.898 kb on - strand, within ydaEat 2077.898 kb on - strand, within ydaEat 2077.910 kb on - strand, within ydaEat 2077.972 kb on - strand, within ydaEat 2077.986 kb on + strand, within ydaEat 2077.986 kb on + strand, within ydaEat 2078.009 kb on + strand, within ydaEat 2078.009 kb on + strand, within ydaEat 2078.009 kb on + strand, within ydaEat 2078.009 kb on + strand, within ydaEat 2078.009 kb on + strand, within ydaEat 2078.034 kb on + strand, within ydaEat 2078.037 kb on + strand, within ydaEat 2078.038 kb on - strand, within ydaEat 2078.038 kb on - strand, within ydaEat 2078.038 kb on - strand, within ydaEat 2078.055 kb on + strand, within ydaEat 2078.055 kb on + strand, within ydaEat 2078.055 kb on + strand, within ydaEat 2078.056 kb on - strand, within ydaEat 2078.064 kb on + strand, within ydaEat 2078.065 kb on - strand, within ydaEat 2078.075 kb on + strand, within ydaEat 2078.076 kb on - strand, within ydaEat 2078.076 kb on - strand, within ydaEat 2078.097 kb on + strand, within ydaEat 2078.097 kb on + strand, within ydaEat 2078.097 kb on + strand, within ydaEat 2078.098 kb on - strand, within ydaEat 2078.098 kb on - strand, within ydaEat 2078.136 kb on + strand, within ydaEat 2078.137 kb on - strand, within ydaEat 2078.137 kb on - strand, within ydaEat 2078.159 kb on - strand, within ydaEat 2078.159 kb on - strand, within ydaEat 2078.220 kb on + strand, within ydaEat 2078.303 kb on + strandat 2078.310 kb on + strandat 2078.311 kb on - strandat 2078.336 kb on + strandat 2078.349 kb on - strandat 2078.408 kb on - strandat 2078.483 kb on + strand, within fbaat 2078.483 kb on + strand, within fbaat 2078.483 kb on + strand, within fbaat 2078.486 kb on + strand, within fbaat 2078.504 kb on - strand, within fbaat 2078.511 kb on - strand, within fbaat 2078.514 kb on + strand, within fbaat 2078.515 kb on - strand, within fbaat 2078.516 kb on + strand, within fbaat 2078.516 kb on + strand, within fbaat 2078.516 kb on + strand, within fbaat 2078.516 kb on + strand, within fbaat 2078.517 kb on - strand, within fbaat 2078.517 kb on - strand, within fbaat 2078.517 kb on - strand, within fbaat 2078.584 kb on + strand, within fbaat 2078.584 kb on + strand, within fbaat 2078.585 kb on - strand, within fbaat 2078.585 kb on - strand, within fbaat 2078.602 kb on + strand, within fbaat 2078.602 kb on + strand, within fbaat 2078.603 kb on - strand, within fbaat 2078.651 kb on - strand, within fbaat 2078.677 kb on - strand, within fbaat 2078.740 kb on + strand, within fbaat 2078.740 kb on + strand, within fbaat 2078.740 kb on + strand, within fbaat 2078.787 kb on + strand, within fbaat 2078.787 kb on + strand, within fbaat 2078.787 kb on + strand, within fbaat 2078.787 kb on + strand, within fbaat 2078.813 kb on + strand, within fbaat 2078.968 kb on + strand, within fbaat 2078.968 kb on + strand, within fbaat 2078.968 kb on + strand, within fbaat 2078.969 kb on - strand, within fbaat 2078.969 kb on - strand, within fbaat 2078.972 kb on - strand, within fbaat 2078.990 kb on + strand, within fbaat 2079.045 kb on + strand, within fbaat 2079.045 kb on + strand, within fbaat 2079.046 kb on - strand, within fbaat 2079.046 kb on - strand, within fbaat 2079.111 kb on + strand, within fbaat 2079.112 kb on - strand, within fbaat 2079.112 kb on - strand, within fbaat 2079.131 kb on - strandat 2079.182 kb on + strandat 2079.241 kb on + strandat 2079.241 kb on + strandat 2079.241 kb on + strandat 2079.241 kb on + strandat 2079.241 kb on + strandat 2079.241 kb on + strandat 2079.242 kb on - strandat 2079.242 kb on - strandat 2079.242 kb on - strandat 2079.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,076,744 - +0.1
2,076,744 - -0.2
2,076,863 - rbsB NIAGMN_10565 0.22 -0.2
2,076,909 + rbsB NIAGMN_10565 0.27 +1.2
2,076,919 - rbsB NIAGMN_10565 0.28 +0.2
2,077,011 - rbsB NIAGMN_10565 0.38 +0.3
2,077,074 + rbsB NIAGMN_10565 0.44 -0.5
2,077,078 + rbsB NIAGMN_10565 0.45 -0.3
2,077,078 + rbsB NIAGMN_10565 0.45 -0.9
2,077,079 - rbsB NIAGMN_10565 0.45 +0.1
2,077,079 - rbsB NIAGMN_10565 0.45 -0.6
2,077,079 - rbsB NIAGMN_10565 0.45 -0.3
2,077,079 - rbsB NIAGMN_10565 0.45 -0.0
2,077,079 - rbsB NIAGMN_10565 0.45 +1.1
2,077,253 + rbsB NIAGMN_10565 0.63 +1.8
2,077,253 + rbsB NIAGMN_10565 0.63 +0.3
2,077,253 + rbsB NIAGMN_10565 0.63 -0.7
2,077,253 + rbsB NIAGMN_10565 0.63 -0.2
2,077,254 - rbsB NIAGMN_10565 0.64 -0.1
2,077,254 - rbsB NIAGMN_10565 0.64 -0.2
2,077,296 - rbsB NIAGMN_10565 0.68 -1.6
2,077,306 - rbsB NIAGMN_10565 0.69 -0.5
2,077,368 + rbsB NIAGMN_10565 0.76 +0.6
2,077,369 - rbsB NIAGMN_10565 0.76 +0.7
2,077,573 + +2.2
2,077,574 - -0.1
2,077,574 - -0.1
2,077,574 - +0.1
2,077,594 + -0.1
2,077,594 + +0.8
2,077,594 + -0.0
2,077,594 + +1.4
2,077,594 + +0.4
2,077,594 + -0.3
2,077,595 - +0.3
2,077,595 - +0.8
2,077,595 - +0.4
2,077,595 - +0.8
2,077,595 - +0.0
2,077,687 - +1.7
2,077,687 - -0.6
2,077,715 + -0.9
2,077,715 + -0.2
2,077,715 + +0.8
2,077,716 - -0.2
2,077,716 - -1.3
2,077,716 - +1.1
2,077,716 - -0.2
2,077,716 - -0.5
2,077,716 - +1.1
2,077,798 - ydaE NIAGMN_10570 0.21 +0.4
2,077,798 - ydaE NIAGMN_10570 0.21 -1.2
2,077,864 - ydaE NIAGMN_10570 0.31 -0.1
2,077,868 + ydaE NIAGMN_10570 0.32 +0.6
2,077,868 + ydaE NIAGMN_10570 0.32 +0.9
2,077,869 - ydaE NIAGMN_10570 0.32 -1.6
2,077,873 - ydaE NIAGMN_10570 0.32 -3.2
2,077,897 + ydaE NIAGMN_10570 0.36 +0.4
2,077,897 + ydaE NIAGMN_10570 0.36 +0.2
2,077,898 - ydaE NIAGMN_10570 0.36 +1.0
2,077,898 - ydaE NIAGMN_10570 0.36 +0.6
2,077,910 - ydaE NIAGMN_10570 0.38 +1.2
2,077,972 - ydaE NIAGMN_10570 0.47 -0.4
2,077,986 + ydaE NIAGMN_10570 0.49 -1.5
2,077,986 + ydaE NIAGMN_10570 0.49 -0.3
2,078,009 + ydaE NIAGMN_10570 0.52 -0.7
2,078,009 + ydaE NIAGMN_10570 0.52 -0.0
2,078,009 + ydaE NIAGMN_10570 0.52 +0.2
2,078,009 + ydaE NIAGMN_10570 0.52 +0.9
2,078,009 + ydaE NIAGMN_10570 0.52 +0.2
2,078,034 + ydaE NIAGMN_10570 0.56 -0.7
2,078,037 + ydaE NIAGMN_10570 0.56 +0.2
2,078,038 - ydaE NIAGMN_10570 0.57 +0.4
2,078,038 - ydaE NIAGMN_10570 0.57 +0.0
2,078,038 - ydaE NIAGMN_10570 0.57 +0.3
2,078,055 + ydaE NIAGMN_10570 0.59 +0.4
2,078,055 + ydaE NIAGMN_10570 0.59 -0.3
2,078,055 + ydaE NIAGMN_10570 0.59 +0.2
2,078,056 - ydaE NIAGMN_10570 0.59 -0.0
2,078,064 + ydaE NIAGMN_10570 0.60 -0.0
2,078,065 - ydaE NIAGMN_10570 0.61 -1.2
2,078,075 + ydaE NIAGMN_10570 0.62 +0.8
2,078,076 - ydaE NIAGMN_10570 0.62 -0.1
2,078,076 - ydaE NIAGMN_10570 0.62 +0.3
2,078,097 + ydaE NIAGMN_10570 0.65 +0.3
2,078,097 + ydaE NIAGMN_10570 0.65 -0.9
2,078,097 + ydaE NIAGMN_10570 0.65 +0.5
2,078,098 - ydaE NIAGMN_10570 0.65 +0.4
2,078,098 - ydaE NIAGMN_10570 0.65 -1.3
2,078,136 + ydaE NIAGMN_10570 0.71 +0.0
2,078,137 - ydaE NIAGMN_10570 0.71 +1.0
2,078,137 - ydaE NIAGMN_10570 0.71 -0.1
2,078,159 - ydaE NIAGMN_10570 0.74 -0.3
2,078,159 - ydaE NIAGMN_10570 0.74 -1.0
2,078,220 + ydaE NIAGMN_10570 0.83 -0.2
2,078,303 + -0.7
2,078,310 + +0.6
2,078,311 - +0.9
2,078,336 + +0.0
2,078,349 - +0.6
2,078,408 - +0.3
2,078,483 + fba NIAGMN_10575 0.16 -0.2
2,078,483 + fba NIAGMN_10575 0.16 -0.5
2,078,483 + fba NIAGMN_10575 0.16 -0.9
2,078,486 + fba NIAGMN_10575 0.16 -0.2
2,078,504 - fba NIAGMN_10575 0.18 -1.4
2,078,511 - fba NIAGMN_10575 0.19 -1.2
2,078,514 + fba NIAGMN_10575 0.19 -0.6
2,078,515 - fba NIAGMN_10575 0.19 -0.0
2,078,516 + fba NIAGMN_10575 0.19 -0.6
2,078,516 + fba NIAGMN_10575 0.19 +1.6
2,078,516 + fba NIAGMN_10575 0.19 +0.1
2,078,516 + fba NIAGMN_10575 0.19 +0.5
2,078,517 - fba NIAGMN_10575 0.20 +0.5
2,078,517 - fba NIAGMN_10575 0.20 +0.1
2,078,517 - fba NIAGMN_10575 0.20 +0.7
2,078,584 + fba NIAGMN_10575 0.27 +0.6
2,078,584 + fba NIAGMN_10575 0.27 +0.3
2,078,585 - fba NIAGMN_10575 0.27 -0.5
2,078,585 - fba NIAGMN_10575 0.27 -0.3
2,078,602 + fba NIAGMN_10575 0.29 -0.4
2,078,602 + fba NIAGMN_10575 0.29 -0.1
2,078,603 - fba NIAGMN_10575 0.30 -0.6
2,078,651 - fba NIAGMN_10575 0.35 +0.1
2,078,677 - fba NIAGMN_10575 0.38 -0.1
2,078,740 + fba NIAGMN_10575 0.45 +0.4
2,078,740 + fba NIAGMN_10575 0.45 +0.7
2,078,740 + fba NIAGMN_10575 0.45 -1.9
2,078,787 + fba NIAGMN_10575 0.51 -1.5
2,078,787 + fba NIAGMN_10575 0.51 -0.3
2,078,787 + fba NIAGMN_10575 0.51 +0.1
2,078,787 + fba NIAGMN_10575 0.51 +0.1
2,078,813 + fba NIAGMN_10575 0.54 +0.2
2,078,968 + fba NIAGMN_10575 0.72 -0.5
2,078,968 + fba NIAGMN_10575 0.72 +0.7
2,078,968 + fba NIAGMN_10575 0.72 +1.4
2,078,969 - fba NIAGMN_10575 0.72 -0.3
2,078,969 - fba NIAGMN_10575 0.72 +0.3
2,078,972 - fba NIAGMN_10575 0.72 -0.0
2,078,990 + fba NIAGMN_10575 0.74 +0.1
2,079,045 + fba NIAGMN_10575 0.81 +0.4
2,079,045 + fba NIAGMN_10575 0.81 -0.2
2,079,046 - fba NIAGMN_10575 0.81 -0.2
2,079,046 - fba NIAGMN_10575 0.81 +0.7
2,079,111 + fba NIAGMN_10575 0.89 +0.3
2,079,112 - fba NIAGMN_10575 0.89 -0.1
2,079,112 - fba NIAGMN_10575 0.89 -0.7
2,079,131 - +0.4
2,079,182 + +1.9
2,079,241 + -0.2
2,079,241 + -0.2
2,079,241 + +0.3
2,079,241 + -0.3
2,079,241 + +0.2
2,079,241 + -0.3
2,079,242 - +0.3
2,079,242 - -0.4
2,079,242 - -0.7
2,079,268 + -0.5

Or see this region's nucleotide sequence