Strain Fitness in Escherichia coli ECRC102 around NIAGMN_10095

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthflC and hflK are separated by 2 nucleotideshflK and hflX are separated by 85 nucleotides NIAGMN_10090: hflC - protease modulator HflC, at 1,982,454 to 1,983,458 hflC NIAGMN_10095: hflK - FtsH protease activity modulator HflK, at 1,983,461 to 1,984,720 hflK NIAGMN_10100: hflX - GTPase HflX, at 1,984,806 to 1,986,086 hflX Position (kb) 1983 1984 1985Strain fitness (log2 ratio) -2 -1 0 1at 1982.486 kb on - strandat 1982.829 kb on - strand, within hflCat 1983.096 kb on - strand, within hflCat 1983.410 kb on - strandat 1983.453 kb on - strandat 1983.453 kb on - strandat 1983.521 kb on - strandat 1984.591 kb on + strand, within hflKat 1984.592 kb on - strand, within hflKat 1984.734 kb on - strandat 1984.817 kb on - strandat 1984.872 kb on - strandat 1984.888 kb on - strandat 1984.921 kb on - strandat 1984.937 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1984.983 kb on - strand, within hflXat 1985.275 kb on - strand, within hflXat 1985.275 kb on - strand, within hflXat 1985.275 kb on - strand, within hflXat 1985.275 kb on - strand, within hflXat 1985.334 kb on - strand, within hflXat 1985.344 kb on - strand, within hflXat 1985.420 kb on - strand, within hflXat 1985.472 kb on - strand, within hflXat 1985.472 kb on - strand, within hflXat 1985.474 kb on - strand, within hflX

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,982,486 - +0.3
1,982,829 - hflC NIAGMN_10090 0.37 +1.6
1,983,096 - hflC NIAGMN_10090 0.64 +0.8
1,983,410 - -1.8
1,983,453 - +1.2
1,983,453 - +1.0
1,983,521 - +1.7
1,984,591 + hflK NIAGMN_10095 0.90 -1.1
1,984,592 - hflK NIAGMN_10095 0.90 -1.5
1,984,734 - +0.0
1,984,817 - -0.8
1,984,872 - -0.3
1,984,888 - +0.3
1,984,921 - -0.2
1,984,937 - hflX NIAGMN_10100 0.10 +0.2
1,984,983 - hflX NIAGMN_10100 0.14 +1.5
1,984,983 - hflX NIAGMN_10100 0.14 +0.1
1,984,983 - hflX NIAGMN_10100 0.14 -0.6
1,984,983 - hflX NIAGMN_10100 0.14 +0.0
1,984,983 - hflX NIAGMN_10100 0.14 +0.3
1,984,983 - hflX NIAGMN_10100 0.14 -0.9
1,984,983 - hflX NIAGMN_10100 0.14 -1.1
1,984,983 - hflX NIAGMN_10100 0.14 +0.1
1,984,983 - hflX NIAGMN_10100 0.14 +0.6
1,984,983 - hflX NIAGMN_10100 0.14 +0.3
1,985,275 - hflX NIAGMN_10100 0.37 -0.0
1,985,275 - hflX NIAGMN_10100 0.37 +1.2
1,985,275 - hflX NIAGMN_10100 0.37 -1.7
1,985,275 - hflX NIAGMN_10100 0.37 -0.6
1,985,334 - hflX NIAGMN_10100 0.41 -1.7
1,985,344 - hflX NIAGMN_10100 0.42 -0.3
1,985,420 - hflX NIAGMN_10100 0.48 -0.2
1,985,472 - hflX NIAGMN_10100 0.52 +1.3
1,985,472 - hflX NIAGMN_10100 0.52 +0.9
1,985,474 - hflX NIAGMN_10100 0.52 +1.5

Or see this region's nucleotide sequence