Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnpA and yjfZ are separated by 859 nucleotides yjfZ and rplI are separated by 70 nucleotides rplI and rpsR are separated by 41 nucleotides rpsR and priB are separated by 4 nucleotides
NIAGMN_09940: tnpA - IS200/IS605-like element IS609 family transposase, at 1,958,282 to 1,958,713
tnpA
NIAGMN_09945: yjfZ - Uncharacterized protein YjfZ, at 1,959,573 to 1,960,130
yjfZ
NIAGMN_09950: rplI - 50S ribosomal protein L9, at 1,960,201 to 1,960,650
rplI
NIAGMN_09955: rpsR - 30S ribosomal protein S18, at 1,960,692 to 1,960,919
rpsR
NIAGMN_09960: priB - primosomal replication protein N, at 1,960,924 to 1,961,238
priB
Position (kb)
1959
1960
1961 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1958.711 kb on + strand at 1958.969 kb on - strand at 1959.376 kb on + strand at 1959.427 kb on - strand at 1959.485 kb on + strand at 1959.485 kb on + strand at 1959.533 kb on + strand at 1959.538 kb on + strand at 1959.616 kb on + strand at 1959.616 kb on + strand at 1959.616 kb on + strand at 1959.639 kb on + strand, within yjfZ at 1959.684 kb on + strand, within yjfZ at 1959.722 kb on + strand, within yjfZ at 1959.733 kb on + strand, within yjfZ at 1959.795 kb on + strand, within yjfZ at 1959.795 kb on + strand, within yjfZ at 1959.844 kb on + strand, within yjfZ at 1959.862 kb on - strand, within yjfZ at 1959.864 kb on - strand, within yjfZ at 1959.884 kb on + strand, within yjfZ at 1959.896 kb on + strand, within yjfZ at 1959.896 kb on + strand, within yjfZ at 1959.979 kb on + strand, within yjfZ at 1960.055 kb on + strand, within yjfZ at 1960.055 kb on + strand, within yjfZ at 1960.055 kb on + strand, within yjfZ at 1960.055 kb on + strand, within yjfZ at 1960.055 kb on + strand, within yjfZ at 1960.055 kb on + strand, within yjfZ at 1960.059 kb on + strand, within yjfZ at 1960.059 kb on + strand, within yjfZ at 1960.059 kb on + strand, within yjfZ at 1960.060 kb on - strand, within yjfZ at 1960.063 kb on + strand, within yjfZ at 1960.087 kb on + strand at 1960.131 kb on + strand at 1960.131 kb on + strand at 1960.132 kb on - strand at 1960.146 kb on - strand at 1960.211 kb on - strand at 1960.673 kb on - strand at 1960.673 kb on - strand at 1960.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,958,711 + -0.3 1,958,969 - +0.8 1,959,376 + -0.2 1,959,427 - +0.9 1,959,485 + -0.6 1,959,485 + +0.2 1,959,533 + -0.4 1,959,538 + -1.5 1,959,616 + +0.8 1,959,616 + -0.9 1,959,616 + -1.4 1,959,639 + yjfZ NIAGMN_09945 0.12 +0.5 1,959,684 + yjfZ NIAGMN_09945 0.20 -1.0 1,959,722 + yjfZ NIAGMN_09945 0.27 -0.3 1,959,733 + yjfZ NIAGMN_09945 0.29 +0.3 1,959,795 + yjfZ NIAGMN_09945 0.40 +0.6 1,959,795 + yjfZ NIAGMN_09945 0.40 -0.5 1,959,844 + yjfZ NIAGMN_09945 0.49 +0.5 1,959,862 - yjfZ NIAGMN_09945 0.52 +0.6 1,959,864 - yjfZ NIAGMN_09945 0.52 -0.8 1,959,884 + yjfZ NIAGMN_09945 0.56 -0.5 1,959,896 + yjfZ NIAGMN_09945 0.58 -1.2 1,959,896 + yjfZ NIAGMN_09945 0.58 -1.9 1,959,979 + yjfZ NIAGMN_09945 0.73 +0.4 1,960,055 + yjfZ NIAGMN_09945 0.86 +0.3 1,960,055 + yjfZ NIAGMN_09945 0.86 -0.3 1,960,055 + yjfZ NIAGMN_09945 0.86 +0.4 1,960,055 + yjfZ NIAGMN_09945 0.86 -0.2 1,960,055 + yjfZ NIAGMN_09945 0.86 +1.3 1,960,055 + yjfZ NIAGMN_09945 0.86 +0.4 1,960,059 + yjfZ NIAGMN_09945 0.87 +0.2 1,960,059 + yjfZ NIAGMN_09945 0.87 -0.1 1,960,059 + yjfZ NIAGMN_09945 0.87 -1.0 1,960,060 - yjfZ NIAGMN_09945 0.87 +1.7 1,960,063 + yjfZ NIAGMN_09945 0.88 -0.0 1,960,087 + +0.1 1,960,131 + -0.0 1,960,131 + +0.2 1,960,132 - +2.1 1,960,146 - +0.2 1,960,211 - -1.8 1,960,673 - +1.3 1,960,673 - -0.5 1,960,673 - +0.4
Or see this region's nucleotide sequence