Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_09485 and NIAGMN_09490 are separated by 101 nucleotides NIAGMN_09490 and NIAGMN_09495 are separated by 159 nucleotides NIAGMN_09495 and NIAGMN_09500 are separated by 369 nucleotides NIAGMN_09500 and uvrD are separated by 128 nucleotides uvrD and yprA overlap by 4 nucleotides
NIAGMN_09485: NIAGMN_09485 - Transposase, IS4 family protein, at 1,849,270 to 1,849,515
_09485
NIAGMN_09490: NIAGMN_09490 - Transposase, at 1,849,617 to 1,849,703
_09490
NIAGMN_09495: NIAGMN_09495 - Orf, at 1,849,863 to 1,849,901
_09495
NIAGMN_09500: NIAGMN_09500 - Orf, at 1,850,271 to 1,850,339
_09500
NIAGMN_09505: uvrD - DNA helicase, at 1,850,468 to 1,852,582
uvrD
NIAGMN_09510: yprA - DEAD/DEAH box helicase, at 1,852,579 to 1,858,920
yprA
Position (kb) 1850
1851
1852
1853 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1849.510 kb on + strand at 1849.510 kb on + strand at 1849.510 kb on + strand at 1849.511 kb on - strand at 1849.586 kb on + strand at 1849.586 kb on + strand at 1849.586 kb on + strand at 1849.605 kb on - strand at 1849.653 kb on - strand, within NIAGMN_09490 at 1849.787 kb on - strand at 1849.855 kb on + strand at 1849.938 kb on + strand at 1850.081 kb on + strand at 1850.239 kb on - strand at 1850.300 kb on + strand, within NIAGMN_09500 at 1850.394 kb on + strand at 1850.423 kb on - strand at 1850.424 kb on + strand at 1850.467 kb on - strand at 1850.480 kb on + strand at 1850.481 kb on - strand at 1850.481 kb on - strand at 1850.526 kb on - strand at 1850.566 kb on + strand at 1850.566 kb on + strand at 1850.571 kb on - strand at 1850.607 kb on - strand at 1850.638 kb on + strand at 1850.658 kb on + strand at 1850.658 kb on + strand at 1850.681 kb on - strand, within uvrD at 1850.746 kb on + strand, within uvrD at 1850.747 kb on - strand, within uvrD at 1850.747 kb on - strand, within uvrD at 1850.747 kb on - strand, within uvrD at 1850.804 kb on - strand, within uvrD at 1850.804 kb on - strand, within uvrD at 1850.807 kb on - strand, within uvrD at 1850.825 kb on - strand, within uvrD at 1850.946 kb on + strand, within uvrD at 1850.947 kb on - strand, within uvrD at 1850.947 kb on - strand, within uvrD at 1850.947 kb on - strand, within uvrD at 1850.947 kb on - strand, within uvrD at 1850.980 kb on + strand, within uvrD at 1851.043 kb on - strand, within uvrD at 1851.047 kb on - strand, within uvrD at 1851.047 kb on - strand, within uvrD at 1851.085 kb on + strand, within uvrD at 1851.086 kb on - strand, within uvrD at 1851.109 kb on + strand, within uvrD at 1851.109 kb on + strand, within uvrD at 1851.121 kb on + strand, within uvrD at 1851.121 kb on + strand, within uvrD at 1851.121 kb on + strand, within uvrD at 1851.122 kb on - strand, within uvrD at 1851.146 kb on - strand, within uvrD at 1851.146 kb on - strand, within uvrD at 1851.184 kb on + strand, within uvrD at 1851.185 kb on - strand, within uvrD at 1851.191 kb on - strand, within uvrD at 1851.191 kb on - strand, within uvrD at 1851.238 kb on + strand, within uvrD at 1851.238 kb on + strand, within uvrD at 1851.238 kb on + strand, within uvrD at 1851.238 kb on + strand, within uvrD at 1851.239 kb on - strand, within uvrD at 1851.239 kb on - strand, within uvrD at 1851.239 kb on - strand, within uvrD at 1851.240 kb on + strand, within uvrD at 1851.241 kb on - strand, within uvrD at 1851.241 kb on - strand, within uvrD at 1851.245 kb on + strand, within uvrD at 1851.245 kb on + strand, within uvrD at 1851.246 kb on - strand, within uvrD at 1851.388 kb on + strand, within uvrD at 1851.389 kb on - strand, within uvrD at 1851.418 kb on - strand, within uvrD at 1851.433 kb on - strand, within uvrD at 1851.482 kb on - strand, within uvrD at 1851.482 kb on - strand, within uvrD at 1851.488 kb on + strand, within uvrD at 1851.489 kb on - strand, within uvrD at 1851.522 kb on + strand, within uvrD at 1851.522 kb on + strand, within uvrD at 1851.523 kb on - strand, within uvrD at 1851.558 kb on + strand, within uvrD at 1851.576 kb on + strand, within uvrD at 1851.577 kb on - strand, within uvrD at 1851.577 kb on - strand, within uvrD at 1851.590 kb on + strand, within uvrD at 1851.590 kb on + strand, within uvrD at 1851.591 kb on - strand, within uvrD at 1851.631 kb on + strand, within uvrD at 1851.653 kb on - strand, within uvrD at 1851.653 kb on - strand, within uvrD at 1851.700 kb on + strand, within uvrD at 1851.734 kb on - strand, within uvrD at 1851.752 kb on + strand, within uvrD at 1851.753 kb on - strand, within uvrD at 1851.794 kb on - strand, within uvrD at 1851.869 kb on + strand, within uvrD at 1851.870 kb on - strand, within uvrD at 1851.895 kb on + strand, within uvrD at 1851.968 kb on - strand, within uvrD at 1851.979 kb on + strand, within uvrD at 1851.979 kb on + strand, within uvrD at 1851.980 kb on - strand, within uvrD at 1852.099 kb on + strand, within uvrD at 1852.099 kb on + strand, within uvrD at 1852.100 kb on - strand, within uvrD at 1852.139 kb on - strand, within uvrD at 1852.182 kb on + strand, within uvrD at 1852.205 kb on - strand, within uvrD at 1852.205 kb on - strand, within uvrD at 1852.235 kb on - strand, within uvrD at 1852.235 kb on - strand, within uvrD at 1852.236 kb on + strand, within uvrD at 1852.236 kb on + strand, within uvrD at 1852.236 kb on + strand, within uvrD at 1852.236 kb on + strand, within uvrD at 1852.237 kb on - strand, within uvrD at 1852.237 kb on - strand, within uvrD at 1852.237 kb on - strand, within uvrD at 1852.240 kb on + strand, within uvrD at 1852.241 kb on - strand, within uvrD at 1852.241 kb on - strand, within uvrD at 1852.241 kb on - strand, within uvrD at 1852.243 kb on + strand, within uvrD at 1852.243 kb on + strand, within uvrD at 1852.243 kb on + strand, within uvrD at 1852.243 kb on + strand, within uvrD at 1852.244 kb on - strand, within uvrD at 1852.244 kb on - strand, within uvrD at 1852.244 kb on - strand, within uvrD at 1852.308 kb on + strand, within uvrD at 1852.309 kb on - strand, within uvrD at 1852.342 kb on + strand, within uvrD at 1852.342 kb on + strand, within uvrD at 1852.342 kb on + strand, within uvrD at 1852.343 kb on - strand, within uvrD at 1852.343 kb on - strand, within uvrD at 1852.343 kb on - strand, within uvrD at 1852.344 kb on + strand, within uvrD at 1852.344 kb on + strand, within uvrD at 1852.344 kb on + strand, within uvrD at 1852.344 kb on + strand, within uvrD at 1852.344 kb on + strand, within uvrD at 1852.344 kb on + strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.345 kb on - strand, within uvrD at 1852.383 kb on + strand at 1852.384 kb on - strand at 1852.443 kb on + strand at 1852.444 kb on - strand at 1852.444 kb on - strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.447 kb on + strand at 1852.448 kb on - strand at 1852.448 kb on - strand at 1852.456 kb on + strand at 1852.457 kb on - strand at 1852.763 kb on + strand at 1852.822 kb on + strand at 1852.823 kb on - strand at 1852.825 kb on + strand at 1852.897 kb on - strand at 1852.941 kb on + strand at 1852.951 kb on - strand at 1852.967 kb on - strand at 1852.976 kb on - strand at 1853.025 kb on + strand at 1853.026 kb on - strand at 1853.027 kb on + strand at 1853.027 kb on + strand at 1853.028 kb on - strand at 1853.028 kb on - strand at 1853.028 kb on - strand at 1853.046 kb on + strand at 1853.047 kb on - strand at 1853.094 kb on + strand at 1853.131 kb on - strand at 1853.148 kb on + strand at 1853.148 kb on + strand at 1853.149 kb on - strand at 1853.154 kb on + strand at 1853.243 kb on + strand, within yprA at 1853.244 kb on - strand, within yprA at 1853.244 kb on - strand, within yprA at 1853.244 kb on - strand, within yprA at 1853.244 kb on - strand, within yprA at 1853.244 kb on - strand, within yprA at 1853.355 kb on - strand, within yprA at 1853.418 kb on + strand, within yprA at 1853.418 kb on + strand, within yprA at 1853.418 kb on + strand, within yprA at 1853.454 kb on + strand, within yprA at 1853.463 kb on + strand, within yprA at 1853.464 kb on - strand, within yprA at 1853.464 kb on - strand, within yprA at 1853.496 kb on + strand, within yprA at 1853.497 kb on - strand, within yprA at 1853.497 kb on - strand, within yprA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,849,510 + -0.1 1,849,510 + +0.8 1,849,510 + +0.2 1,849,511 - -0.1 1,849,586 + +0.0 1,849,586 + +0.1 1,849,586 + +0.7 1,849,605 - +1.4 1,849,653 - NIAGMN_09490 0.41 -0.1 1,849,787 - +1.0 1,849,855 + +0.9 1,849,938 + -0.5 1,850,081 + +0.2 1,850,239 - +0.1 1,850,300 + NIAGMN_09500 0.42 -0.1 1,850,394 + +0.1 1,850,423 - +0.5 1,850,424 + -0.9 1,850,467 - -0.6 1,850,480 + +0.5 1,850,481 - -4.8 1,850,481 - +1.2 1,850,526 - -0.1 1,850,566 + -0.8 1,850,566 + -0.5 1,850,571 - -0.6 1,850,607 - -1.9 1,850,638 + +1.1 1,850,658 + -1.9 1,850,658 + -0.8 1,850,681 - uvrD NIAGMN_09505 0.10 -2.2 1,850,746 + uvrD NIAGMN_09505 0.13 -0.3 1,850,747 - uvrD NIAGMN_09505 0.13 +0.6 1,850,747 - uvrD NIAGMN_09505 0.13 -0.5 1,850,747 - uvrD NIAGMN_09505 0.13 +1.3 1,850,804 - uvrD NIAGMN_09505 0.16 +0.4 1,850,804 - uvrD NIAGMN_09505 0.16 -0.6 1,850,807 - uvrD NIAGMN_09505 0.16 +0.1 1,850,825 - uvrD NIAGMN_09505 0.17 +0.0 1,850,946 + uvrD NIAGMN_09505 0.23 +0.8 1,850,947 - uvrD NIAGMN_09505 0.23 +0.6 1,850,947 - uvrD NIAGMN_09505 0.23 -0.5 1,850,947 - uvrD NIAGMN_09505 0.23 -0.0 1,850,947 - uvrD NIAGMN_09505 0.23 -0.4 1,850,980 + uvrD NIAGMN_09505 0.24 +1.1 1,851,043 - uvrD NIAGMN_09505 0.27 +0.5 1,851,047 - uvrD NIAGMN_09505 0.27 -0.3 1,851,047 - uvrD NIAGMN_09505 0.27 -0.9 1,851,085 + uvrD NIAGMN_09505 0.29 +1.7 1,851,086 - uvrD NIAGMN_09505 0.29 +0.1 1,851,109 + uvrD NIAGMN_09505 0.30 -0.6 1,851,109 + uvrD NIAGMN_09505 0.30 -0.1 1,851,121 + uvrD NIAGMN_09505 0.31 +1.1 1,851,121 + uvrD NIAGMN_09505 0.31 -0.3 1,851,121 + uvrD NIAGMN_09505 0.31 -0.8 1,851,122 - uvrD NIAGMN_09505 0.31 +0.4 1,851,146 - uvrD NIAGMN_09505 0.32 +0.6 1,851,146 - uvrD NIAGMN_09505 0.32 +0.5 1,851,184 + uvrD NIAGMN_09505 0.34 +1.1 1,851,185 - uvrD NIAGMN_09505 0.34 +0.7 1,851,191 - uvrD NIAGMN_09505 0.34 -0.6 1,851,191 - uvrD NIAGMN_09505 0.34 -0.9 1,851,238 + uvrD NIAGMN_09505 0.36 +0.4 1,851,238 + uvrD NIAGMN_09505 0.36 +0.6 1,851,238 + uvrD NIAGMN_09505 0.36 +0.9 1,851,238 + uvrD NIAGMN_09505 0.36 -0.0 1,851,239 - uvrD NIAGMN_09505 0.36 -1.9 1,851,239 - uvrD NIAGMN_09505 0.36 +0.7 1,851,239 - uvrD NIAGMN_09505 0.36 -0.1 1,851,240 + uvrD NIAGMN_09505 0.37 +1.3 1,851,241 - uvrD NIAGMN_09505 0.37 +0.8 1,851,241 - uvrD NIAGMN_09505 0.37 -1.2 1,851,245 + uvrD NIAGMN_09505 0.37 +1.7 1,851,245 + uvrD NIAGMN_09505 0.37 -0.0 1,851,246 - uvrD NIAGMN_09505 0.37 -0.6 1,851,388 + uvrD NIAGMN_09505 0.43 -2.0 1,851,389 - uvrD NIAGMN_09505 0.44 -0.5 1,851,418 - uvrD NIAGMN_09505 0.45 -0.7 1,851,433 - uvrD NIAGMN_09505 0.46 +0.2 1,851,482 - uvrD NIAGMN_09505 0.48 +0.2 1,851,482 - uvrD NIAGMN_09505 0.48 +0.1 1,851,488 + uvrD NIAGMN_09505 0.48 +0.8 1,851,489 - uvrD NIAGMN_09505 0.48 +1.3 1,851,522 + uvrD NIAGMN_09505 0.50 +0.9 1,851,522 + uvrD NIAGMN_09505 0.50 +0.5 1,851,523 - uvrD NIAGMN_09505 0.50 +0.5 1,851,558 + uvrD NIAGMN_09505 0.52 +0.7 1,851,576 + uvrD NIAGMN_09505 0.52 -0.3 1,851,577 - uvrD NIAGMN_09505 0.52 +0.3 1,851,577 - uvrD NIAGMN_09505 0.52 +0.2 1,851,590 + uvrD NIAGMN_09505 0.53 +0.3 1,851,590 + uvrD NIAGMN_09505 0.53 +0.6 1,851,591 - uvrD NIAGMN_09505 0.53 +0.8 1,851,631 + uvrD NIAGMN_09505 0.55 -0.8 1,851,653 - uvrD NIAGMN_09505 0.56 +0.2 1,851,653 - uvrD NIAGMN_09505 0.56 -0.3 1,851,700 + uvrD NIAGMN_09505 0.58 +0.2 1,851,734 - uvrD NIAGMN_09505 0.60 -1.8 1,851,752 + uvrD NIAGMN_09505 0.61 +0.1 1,851,753 - uvrD NIAGMN_09505 0.61 +0.3 1,851,794 - uvrD NIAGMN_09505 0.63 +0.4 1,851,869 + uvrD NIAGMN_09505 0.66 +0.3 1,851,870 - uvrD NIAGMN_09505 0.66 -1.3 1,851,895 + uvrD NIAGMN_09505 0.67 +0.6 1,851,968 - uvrD NIAGMN_09505 0.71 -0.6 1,851,979 + uvrD NIAGMN_09505 0.71 +0.2 1,851,979 + uvrD NIAGMN_09505 0.71 -1.0 1,851,980 - uvrD NIAGMN_09505 0.71 -0.0 1,852,099 + uvrD NIAGMN_09505 0.77 -0.1 1,852,099 + uvrD NIAGMN_09505 0.77 +0.5 1,852,100 - uvrD NIAGMN_09505 0.77 +0.3 1,852,139 - uvrD NIAGMN_09505 0.79 +0.4 1,852,182 + uvrD NIAGMN_09505 0.81 +0.6 1,852,205 - uvrD NIAGMN_09505 0.82 -0.1 1,852,205 - uvrD NIAGMN_09505 0.82 +0.7 1,852,235 - uvrD NIAGMN_09505 0.84 +0.1 1,852,235 - uvrD NIAGMN_09505 0.84 +0.9 1,852,236 + uvrD NIAGMN_09505 0.84 +0.3 1,852,236 + uvrD NIAGMN_09505 0.84 +0.8 1,852,236 + uvrD NIAGMN_09505 0.84 -0.5 1,852,236 + uvrD NIAGMN_09505 0.84 -0.3 1,852,237 - uvrD NIAGMN_09505 0.84 -1.2 1,852,237 - uvrD NIAGMN_09505 0.84 -0.6 1,852,237 - uvrD NIAGMN_09505 0.84 +0.1 1,852,240 + uvrD NIAGMN_09505 0.84 -0.4 1,852,241 - uvrD NIAGMN_09505 0.84 -0.1 1,852,241 - uvrD NIAGMN_09505 0.84 -0.1 1,852,241 - uvrD NIAGMN_09505 0.84 -0.0 1,852,243 + uvrD NIAGMN_09505 0.84 -0.2 1,852,243 + uvrD NIAGMN_09505 0.84 +0.4 1,852,243 + uvrD NIAGMN_09505 0.84 -2.1 1,852,243 + uvrD NIAGMN_09505 0.84 +0.3 1,852,244 - uvrD NIAGMN_09505 0.84 +0.1 1,852,244 - uvrD NIAGMN_09505 0.84 +0.6 1,852,244 - uvrD NIAGMN_09505 0.84 +0.2 1,852,308 + uvrD NIAGMN_09505 0.87 +0.0 1,852,309 - uvrD NIAGMN_09505 0.87 +0.7 1,852,342 + uvrD NIAGMN_09505 0.89 +0.1 1,852,342 + uvrD NIAGMN_09505 0.89 -0.3 1,852,342 + uvrD NIAGMN_09505 0.89 -0.3 1,852,343 - uvrD NIAGMN_09505 0.89 -0.5 1,852,343 - uvrD NIAGMN_09505 0.89 -2.3 1,852,343 - uvrD NIAGMN_09505 0.89 -0.4 1,852,344 + uvrD NIAGMN_09505 0.89 -0.7 1,852,344 + uvrD NIAGMN_09505 0.89 -0.6 1,852,344 + uvrD NIAGMN_09505 0.89 -0.5 1,852,344 + uvrD NIAGMN_09505 0.89 +0.2 1,852,344 + uvrD NIAGMN_09505 0.89 -0.2 1,852,344 + uvrD NIAGMN_09505 0.89 +1.2 1,852,345 - uvrD NIAGMN_09505 0.89 +0.6 1,852,345 - uvrD NIAGMN_09505 0.89 +0.2 1,852,345 - uvrD NIAGMN_09505 0.89 +0.5 1,852,345 - uvrD NIAGMN_09505 0.89 +0.6 1,852,345 - uvrD NIAGMN_09505 0.89 -0.1 1,852,345 - uvrD NIAGMN_09505 0.89 -1.5 1,852,345 - uvrD NIAGMN_09505 0.89 +0.2 1,852,345 - uvrD NIAGMN_09505 0.89 +0.4 1,852,345 - uvrD NIAGMN_09505 0.89 +0.3 1,852,345 - uvrD NIAGMN_09505 0.89 -0.1 1,852,383 + -0.6 1,852,384 - +0.5 1,852,443 + +0.6 1,852,444 - +0.4 1,852,444 - +0.2 1,852,447 + +0.6 1,852,447 + -0.6 1,852,447 + -0.3 1,852,447 + +0.3 1,852,447 + -0.1 1,852,447 + -0.1 1,852,447 + -0.3 1,852,447 + -0.9 1,852,447 + +0.4 1,852,448 - +0.2 1,852,448 - -0.0 1,852,456 + -2.1 1,852,457 - -0.8 1,852,763 + +1.2 1,852,822 + +1.2 1,852,823 - +0.9 1,852,825 + -0.4 1,852,897 - -0.4 1,852,941 + -0.3 1,852,951 - -0.3 1,852,967 - +0.5 1,852,976 - -0.9 1,853,025 + -0.5 1,853,026 - -0.2 1,853,027 + +0.4 1,853,027 + -0.3 1,853,028 - +0.2 1,853,028 - -0.4 1,853,028 - -0.9 1,853,046 + +0.7 1,853,047 - -0.9 1,853,094 + +0.2 1,853,131 - -0.9 1,853,148 + -1.4 1,853,148 + -1.3 1,853,149 - -0.6 1,853,154 + -0.9 1,853,243 + yprA NIAGMN_09510 0.10 -1.8 1,853,244 - yprA NIAGMN_09510 0.10 +0.0 1,853,244 - yprA NIAGMN_09510 0.10 -0.5 1,853,244 - yprA NIAGMN_09510 0.10 -2.1 1,853,244 - yprA NIAGMN_09510 0.10 +0.2 1,853,244 - yprA NIAGMN_09510 0.10 +0.5 1,853,355 - yprA NIAGMN_09510 0.12 +0.1 1,853,418 + yprA NIAGMN_09510 0.13 -0.5 1,853,418 + yprA NIAGMN_09510 0.13 +1.1 1,853,418 + yprA NIAGMN_09510 0.13 -0.1 1,853,454 + yprA NIAGMN_09510 0.14 -0.5 1,853,463 + yprA NIAGMN_09510 0.14 -0.2 1,853,464 - yprA NIAGMN_09510 0.14 -0.3 1,853,464 - yprA NIAGMN_09510 0.14 +0.2 1,853,496 + yprA NIAGMN_09510 0.14 +0.7 1,853,497 - yprA NIAGMN_09510 0.14 -0.9 1,853,497 - yprA NIAGMN_09510 0.14 -0.9
Or see this region's nucleotide sequence