Strain Fitness in Escherichia coli ECRC102 around NIAGMN_08010

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxA and fabZ are separated by 3 nucleotidesfabZ and lpxD are separated by 104 nucleotideslpxD and skp are separated by 3 nucleotidesskp and bamA are separated by 120 nucleotides NIAGMN_08000: lpxA - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,535,353 to 1,536,141 lpxA NIAGMN_08005: fabZ - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,536,145 to 1,536,600 fabZ NIAGMN_08010: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,536,705 to 1,537,730 lpxD NIAGMN_08015: skp - molecular chaperone Skp, at 1,537,734 to 1,538,219 skp NIAGMN_08020: bamA - outer membrane protein assembly factor BamA, at 1,538,340 to 1,540,772 bamA Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -2 -1 0 1 2at 1536.636 kb on - strandat 1536.660 kb on - strandat 1538.043 kb on - strand, within skpat 1538.043 kb on - strand, within skpat 1538.091 kb on - strand, within skpat 1538.091 kb on - strand, within skpat 1538.113 kb on - strand, within skpat 1538.113 kb on - strand, within skpat 1538.203 kb on - strandat 1538.203 kb on - strandat 1538.203 kb on - strandat 1538.223 kb on - strandat 1538.232 kb on - strandat 1538.283 kb on - strandat 1538.285 kb on - strandat 1538.296 kb on - strandat 1538.308 kb on - strandat 1538.308 kb on - strandat 1538.308 kb on - strandat 1538.308 kb on - strandat 1538.308 kb on - strandat 1538.319 kb on - strandat 1538.319 kb on - strandat 1538.319 kb on - strandat 1538.319 kb on - strandat 1538.319 kb on - strandat 1538.341 kb on + strandat 1538.341 kb on + strandat 1538.342 kb on - strandat 1538.342 kb on - strandat 1538.342 kb on - strandat 1538.342 kb on - strandat 1538.342 kb on - strandat 1538.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,536,636 - +0.3
1,536,660 - -0.1
1,538,043 - skp NIAGMN_08015 0.64 -0.4
1,538,043 - skp NIAGMN_08015 0.64 +0.5
1,538,091 - skp NIAGMN_08015 0.73 -0.4
1,538,091 - skp NIAGMN_08015 0.73 -0.2
1,538,113 - skp NIAGMN_08015 0.78 +0.0
1,538,113 - skp NIAGMN_08015 0.78 -0.3
1,538,203 - -1.0
1,538,203 - -0.2
1,538,203 - +0.1
1,538,223 - -0.8
1,538,232 - -0.3
1,538,283 - +1.0
1,538,285 - +0.0
1,538,296 - +0.9
1,538,308 - -0.2
1,538,308 - +0.3
1,538,308 - -0.2
1,538,308 - +0.8
1,538,308 - +0.3
1,538,319 - +1.2
1,538,319 - -0.2
1,538,319 - +0.1
1,538,319 - +0.3
1,538,319 - -0.7
1,538,341 + +2.5
1,538,341 + +1.1
1,538,342 - +0.5
1,538,342 - -2.4
1,538,342 - +0.5
1,538,342 - +0.1
1,538,342 - +0.3
1,538,342 - +0.4

Or see this region's nucleotide sequence