Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxA and fabZ are separated by 3 nucleotides fabZ and lpxD are separated by 104 nucleotides lpxD and skp are separated by 3 nucleotides skp and bamA are separated by 120 nucleotides
NIAGMN_08000: lpxA - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,535,353 to 1,536,141
lpxA
NIAGMN_08005: fabZ - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,536,145 to 1,536,600
fabZ
NIAGMN_08010: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,536,705 to 1,537,730
lpxD
NIAGMN_08015: skp - molecular chaperone Skp, at 1,537,734 to 1,538,219
skp
NIAGMN_08020: bamA - outer membrane protein assembly factor BamA, at 1,538,340 to 1,540,772
bamA
Position (kb)
1536
1537
1538 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1536.636 kb on - strand at 1536.660 kb on - strand at 1538.043 kb on - strand, within skp at 1538.043 kb on - strand, within skp at 1538.091 kb on - strand, within skp at 1538.091 kb on - strand, within skp at 1538.113 kb on - strand, within skp at 1538.113 kb on - strand, within skp at 1538.203 kb on - strand at 1538.203 kb on - strand at 1538.203 kb on - strand at 1538.223 kb on - strand at 1538.232 kb on - strand at 1538.283 kb on - strand at 1538.285 kb on - strand at 1538.296 kb on - strand at 1538.308 kb on - strand at 1538.308 kb on - strand at 1538.308 kb on - strand at 1538.308 kb on - strand at 1538.308 kb on - strand at 1538.319 kb on - strand at 1538.319 kb on - strand at 1538.319 kb on - strand at 1538.319 kb on - strand at 1538.319 kb on - strand at 1538.341 kb on + strand at 1538.341 kb on + strand at 1538.342 kb on - strand at 1538.342 kb on - strand at 1538.342 kb on - strand at 1538.342 kb on - strand at 1538.342 kb on - strand at 1538.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,536,636 - +0.3 1,536,660 - -0.1 1,538,043 - skp NIAGMN_08015 0.64 -0.4 1,538,043 - skp NIAGMN_08015 0.64 +0.5 1,538,091 - skp NIAGMN_08015 0.73 -0.4 1,538,091 - skp NIAGMN_08015 0.73 -0.2 1,538,113 - skp NIAGMN_08015 0.78 +0.0 1,538,113 - skp NIAGMN_08015 0.78 -0.3 1,538,203 - -1.0 1,538,203 - -0.2 1,538,203 - +0.1 1,538,223 - -0.8 1,538,232 - -0.3 1,538,283 - +1.0 1,538,285 - +0.0 1,538,296 - +0.9 1,538,308 - -0.2 1,538,308 - +0.3 1,538,308 - -0.2 1,538,308 - +0.8 1,538,308 - +0.3 1,538,319 - +1.2 1,538,319 - -0.2 1,538,319 - +0.1 1,538,319 - +0.3 1,538,319 - -0.7 1,538,341 + +2.5 1,538,341 + +1.1 1,538,342 - +0.5 1,538,342 - -2.4 1,538,342 - +0.5 1,538,342 - +0.1 1,538,342 - +0.3 1,538,342 - +0.4
Or see this region's nucleotide sequence