Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07155

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_07145 and NIAGMN_07150 overlap by 47 nucleotidesNIAGMN_07150 and NIAGMN_07155 are separated by 181 nucleotidesNIAGMN_07155 and lutC are separated by 494 nucleotides NIAGMN_07145: NIAGMN_07145 - Adhesin, at 1,372,524 to 1,373,618 _07145 NIAGMN_07150: NIAGMN_07150 - Autotransporter outer membrane beta-barrel domain-containing protein, at 1,373,572 to 1,373,784 _07150 NIAGMN_07155: NIAGMN_07155 - Uncharacterized protein YkgH, at 1,373,966 to 1,374,382 _07155 NIAGMN_07160: lutC - lactate utilization protein C, at 1,374,877 to 1,375,572 lutC Position (kb) 1373 1374 1375Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1373.026 kb on + strand, within NIAGMN_07145at 1373.178 kb on - strand, within NIAGMN_07145at 1373.204 kb on + strand, within NIAGMN_07145at 1373.401 kb on + strand, within NIAGMN_07145at 1373.424 kb on + strand, within NIAGMN_07145at 1373.435 kb on + strand, within NIAGMN_07145at 1373.442 kb on + strand, within NIAGMN_07145at 1373.443 kb on - strand, within NIAGMN_07145at 1373.444 kb on + strand, within NIAGMN_07145at 1373.475 kb on - strand, within NIAGMN_07145at 1373.485 kb on + strand, within NIAGMN_07145at 1373.485 kb on + strand, within NIAGMN_07145at 1373.545 kb on + strandat 1373.546 kb on - strandat 1373.683 kb on - strand, within NIAGMN_07150at 1373.704 kb on + strand, within NIAGMN_07150at 1373.705 kb on - strand, within NIAGMN_07150at 1373.705 kb on - strand, within NIAGMN_07150at 1373.720 kb on - strand, within NIAGMN_07150at 1373.759 kb on + strand, within NIAGMN_07150at 1373.782 kb on + strandat 1373.816 kb on + strandat 1373.816 kb on + strandat 1373.818 kb on + strandat 1373.837 kb on + strandat 1373.838 kb on - strandat 1373.856 kb on - strandat 1373.860 kb on - strandat 1374.665 kb on + strandat 1374.766 kb on + strandat 1374.782 kb on - strandat 1374.782 kb on - strandat 1374.869 kb on + strandat 1374.869 kb on + strandat 1374.870 kb on - strandat 1374.981 kb on + strand, within lutCat 1374.982 kb on - strand, within lutCat 1374.984 kb on + strand, within lutCat 1374.984 kb on + strand, within lutCat 1374.985 kb on - strand, within lutCat 1375.167 kb on - strand, within lutCat 1375.167 kb on - strand, within lutCat 1375.167 kb on - strand, within lutCat 1375.176 kb on - strand, within lutCat 1375.348 kb on + strand, within lutC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,373,026 + NIAGMN_07145 0.46 -0.4
1,373,178 - NIAGMN_07145 0.60 +0.9
1,373,204 + NIAGMN_07145 0.62 +0.1
1,373,401 + NIAGMN_07145 0.80 +0.0
1,373,424 + NIAGMN_07145 0.82 +0.7
1,373,435 + NIAGMN_07145 0.83 -1.5
1,373,442 + NIAGMN_07145 0.84 -0.1
1,373,443 - NIAGMN_07145 0.84 -2.7
1,373,444 + NIAGMN_07145 0.84 +0.7
1,373,475 - NIAGMN_07145 0.87 -1.0
1,373,485 + NIAGMN_07145 0.88 +0.1
1,373,485 + NIAGMN_07145 0.88 -1.1
1,373,545 + -1.4
1,373,546 - -1.0
1,373,683 - NIAGMN_07150 0.52 +0.6
1,373,704 + NIAGMN_07150 0.62 -0.1
1,373,705 - NIAGMN_07150 0.62 +1.9
1,373,705 - NIAGMN_07150 0.62 +1.1
1,373,720 - NIAGMN_07150 0.69 -0.0
1,373,759 + NIAGMN_07150 0.88 +0.0
1,373,782 + -0.2
1,373,816 + +0.5
1,373,816 + -1.6
1,373,818 + -0.5
1,373,837 + +0.2
1,373,838 - +0.4
1,373,856 - -0.3
1,373,860 - -0.4
1,374,665 + +0.9
1,374,766 + +3.2
1,374,782 - -0.7
1,374,782 - +0.5
1,374,869 + +0.7
1,374,869 + +0.7
1,374,870 - -1.4
1,374,981 + lutC NIAGMN_07160 0.15 +0.4
1,374,982 - lutC NIAGMN_07160 0.15 -0.6
1,374,984 + lutC NIAGMN_07160 0.15 -0.3
1,374,984 + lutC NIAGMN_07160 0.15 -0.7
1,374,985 - lutC NIAGMN_07160 0.16 +0.2
1,375,167 - lutC NIAGMN_07160 0.42 +0.2
1,375,167 - lutC NIAGMN_07160 0.42 -0.9
1,375,167 - lutC NIAGMN_07160 0.42 -2.8
1,375,176 - lutC NIAGMN_07160 0.43 -0.4
1,375,348 + lutC NIAGMN_07160 0.68 -0.8

Or see this region's nucleotide sequence