Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaT and glsA are separated by 2 nucleotides glsA and copA are separated by 261 nucleotides
NIAGMN_06115: ybaT - Inner membrane transport protein YbaT, at 1,161,174 to 1,162,466
ybaT
NIAGMN_06120: glsA - glutaminase A, at 1,162,469 to 1,163,401
glsA
NIAGMN_06125: copA - copper-exporting P-type ATPase CopA, at 1,163,663 to 1,166,167
copA
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1161.492 kb on - strand, within ybaT at 1161.609 kb on + strand, within ybaT at 1161.634 kb on + strand, within ybaT at 1161.635 kb on - strand, within ybaT at 1161.635 kb on - strand, within ybaT at 1161.702 kb on + strand, within ybaT at 1161.703 kb on - strand, within ybaT at 1161.712 kb on - strand, within ybaT at 1161.743 kb on + strand, within ybaT at 1161.743 kb on + strand, within ybaT at 1161.745 kb on + strand, within ybaT at 1161.745 kb on + strand, within ybaT at 1161.745 kb on + strand, within ybaT at 1161.745 kb on + strand, within ybaT at 1161.746 kb on - strand, within ybaT at 1161.746 kb on - strand, within ybaT at 1161.746 kb on - strand, within ybaT at 1161.746 kb on - strand, within ybaT at 1161.851 kb on - strand, within ybaT at 1161.950 kb on + strand, within ybaT at 1161.951 kb on - strand, within ybaT at 1161.961 kb on - strand, within ybaT at 1162.008 kb on + strand, within ybaT at 1162.076 kb on + strand, within ybaT at 1162.077 kb on - strand, within ybaT at 1162.213 kb on - strand, within ybaT at 1162.276 kb on + strand, within ybaT at 1162.276 kb on + strand, within ybaT at 1162.277 kb on - strand, within ybaT at 1162.449 kb on - strand at 1162.616 kb on + strand, within glsA at 1162.617 kb on - strand, within glsA at 1162.704 kb on + strand, within glsA at 1162.704 kb on + strand, within glsA at 1162.704 kb on + strand, within glsA at 1162.799 kb on - strand, within glsA at 1162.827 kb on + strand, within glsA at 1162.827 kb on + strand, within glsA at 1162.827 kb on + strand, within glsA at 1162.828 kb on - strand, within glsA at 1162.828 kb on - strand, within glsA at 1162.828 kb on - strand, within glsA at 1162.857 kb on + strand, within glsA at 1162.864 kb on - strand, within glsA at 1162.876 kb on - strand, within glsA at 1162.978 kb on + strand, within glsA at 1162.979 kb on - strand, within glsA at 1163.054 kb on + strand, within glsA at 1163.108 kb on - strand, within glsA at 1163.172 kb on - strand, within glsA at 1163.189 kb on - strand, within glsA at 1163.242 kb on + strand, within glsA at 1163.243 kb on - strand, within glsA at 1163.244 kb on + strand, within glsA at 1163.316 kb on + strand at 1163.317 kb on - strand at 1163.317 kb on - strand at 1163.317 kb on - strand at 1163.358 kb on + strand at 1163.358 kb on + strand at 1163.359 kb on - strand at 1163.359 kb on - strand at 1163.382 kb on - strand at 1163.396 kb on + strand at 1163.396 kb on + strand at 1163.421 kb on - strand at 1163.422 kb on + strand at 1163.422 kb on + strand at 1163.422 kb on + strand at 1163.435 kb on + strand at 1163.436 kb on - strand at 1163.475 kb on + strand at 1163.481 kb on - strand at 1163.494 kb on + strand at 1163.495 kb on - strand at 1163.495 kb on - strand at 1163.495 kb on - strand at 1163.495 kb on - strand at 1163.499 kb on - strand at 1163.650 kb on - strand at 1163.662 kb on + strand at 1163.662 kb on + strand at 1163.663 kb on - strand at 1163.663 kb on - strand at 1163.663 kb on - strand at 1163.843 kb on + strand at 1163.856 kb on + strand at 1164.012 kb on + strand, within copA at 1164.074 kb on - strand, within copA at 1164.112 kb on - strand, within copA at 1164.284 kb on - strand, within copA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,161,492 - ybaT NIAGMN_06115 0.25 +0.3 1,161,609 + ybaT NIAGMN_06115 0.34 +1.5 1,161,634 + ybaT NIAGMN_06115 0.36 -0.5 1,161,635 - ybaT NIAGMN_06115 0.36 +0.2 1,161,635 - ybaT NIAGMN_06115 0.36 -0.2 1,161,702 + ybaT NIAGMN_06115 0.41 -0.3 1,161,703 - ybaT NIAGMN_06115 0.41 +0.0 1,161,712 - ybaT NIAGMN_06115 0.42 +0.4 1,161,743 + ybaT NIAGMN_06115 0.44 +0.8 1,161,743 + ybaT NIAGMN_06115 0.44 +0.1 1,161,745 + ybaT NIAGMN_06115 0.44 +0.3 1,161,745 + ybaT NIAGMN_06115 0.44 -0.0 1,161,745 + ybaT NIAGMN_06115 0.44 +0.1 1,161,745 + ybaT NIAGMN_06115 0.44 -0.2 1,161,746 - ybaT NIAGMN_06115 0.44 -0.6 1,161,746 - ybaT NIAGMN_06115 0.44 +0.3 1,161,746 - ybaT NIAGMN_06115 0.44 +0.2 1,161,746 - ybaT NIAGMN_06115 0.44 +0.1 1,161,851 - ybaT NIAGMN_06115 0.52 -0.0 1,161,950 + ybaT NIAGMN_06115 0.60 -0.2 1,161,951 - ybaT NIAGMN_06115 0.60 +0.9 1,161,961 - ybaT NIAGMN_06115 0.61 -0.2 1,162,008 + ybaT NIAGMN_06115 0.65 -0.3 1,162,076 + ybaT NIAGMN_06115 0.70 +0.3 1,162,077 - ybaT NIAGMN_06115 0.70 +0.7 1,162,213 - ybaT NIAGMN_06115 0.80 -0.5 1,162,276 + ybaT NIAGMN_06115 0.85 +0.8 1,162,276 + ybaT NIAGMN_06115 0.85 -1.0 1,162,277 - ybaT NIAGMN_06115 0.85 +0.4 1,162,449 - +0.0 1,162,616 + glsA NIAGMN_06120 0.16 -0.5 1,162,617 - glsA NIAGMN_06120 0.16 -1.7 1,162,704 + glsA NIAGMN_06120 0.25 +3.7 1,162,704 + glsA NIAGMN_06120 0.25 -1.2 1,162,704 + glsA NIAGMN_06120 0.25 -0.5 1,162,799 - glsA NIAGMN_06120 0.35 +0.6 1,162,827 + glsA NIAGMN_06120 0.38 -1.5 1,162,827 + glsA NIAGMN_06120 0.38 -0.1 1,162,827 + glsA NIAGMN_06120 0.38 +0.4 1,162,828 - glsA NIAGMN_06120 0.38 -0.6 1,162,828 - glsA NIAGMN_06120 0.38 -0.9 1,162,828 - glsA NIAGMN_06120 0.38 -0.1 1,162,857 + glsA NIAGMN_06120 0.42 -0.5 1,162,864 - glsA NIAGMN_06120 0.42 -0.8 1,162,876 - glsA NIAGMN_06120 0.44 -0.4 1,162,978 + glsA NIAGMN_06120 0.55 -0.1 1,162,979 - glsA NIAGMN_06120 0.55 +0.4 1,163,054 + glsA NIAGMN_06120 0.63 -1.5 1,163,108 - glsA NIAGMN_06120 0.68 -0.4 1,163,172 - glsA NIAGMN_06120 0.75 +1.6 1,163,189 - glsA NIAGMN_06120 0.77 +0.9 1,163,242 + glsA NIAGMN_06120 0.83 -1.3 1,163,243 - glsA NIAGMN_06120 0.83 +0.5 1,163,244 + glsA NIAGMN_06120 0.83 +0.8 1,163,316 + +1.7 1,163,317 - -0.2 1,163,317 - +0.2 1,163,317 - -0.4 1,163,358 + +1.0 1,163,358 + +0.3 1,163,359 - +1.2 1,163,359 - +0.4 1,163,382 - +0.6 1,163,396 + +2.2 1,163,396 + -0.2 1,163,421 - +0.7 1,163,422 + +0.1 1,163,422 + -0.4 1,163,422 + -0.4 1,163,435 + +0.5 1,163,436 - -0.8 1,163,475 + +0.1 1,163,481 - +0.5 1,163,494 + +1.3 1,163,495 - +0.9 1,163,495 - +1.4 1,163,495 - -0.7 1,163,495 - +0.5 1,163,499 - -1.1 1,163,650 - +0.1 1,163,662 + +0.6 1,163,662 + -1.0 1,163,663 - +1.3 1,163,663 - +1.1 1,163,663 - +1.6 1,163,843 + +0.1 1,163,856 + +0.2 1,164,012 + copA NIAGMN_06125 0.14 +0.2 1,164,074 - copA NIAGMN_06125 0.16 -1.5 1,164,112 - copA NIAGMN_06125 0.18 -0.6 1,164,284 - copA NIAGMN_06125 0.25 -0.2
Or see this region's nucleotide sequence