Strain Fitness in Escherichia coli ECRC102 around NIAGMN_06010

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntylbG and NIAGMN_06005 are separated by 743 nucleotidesNIAGMN_06005 and NIAGMN_06010 overlap by 20 nucleotidesNIAGMN_06010 and ybbP are separated by 429 nucleotides NIAGMN_06000: ylbG - Uncharacterized protein YlbG, at 1,118,431 to 1,118,802 ylbG NIAGMN_06005: NIAGMN_06005 - Protein, at 1,119,546 to 1,119,806 _06005 NIAGMN_06010: NIAGMN_06010 - RHS element protein, at 1,119,787 to 1,123,983 _06010 NIAGMN_06015: ybbP - Uncharacterized ABC transporter permease YbbP, at 1,124,413 to 1,126,827 ybbP Position (kb) 1119 1120 1121 1122 1123 1124Strain fitness (log2 ratio) -2 -1 0 1at 1118.839 kb on - strandat 1118.839 kb on - strandat 1118.873 kb on + strandat 1119.476 kb on - strandat 1119.861 kb on + strandat 1120.084 kb on - strandat 1120.150 kb on + strandat 1120.174 kb on + strandat 1120.175 kb on - strandat 1120.216 kb on + strand, within NIAGMN_06010at 1120.216 kb on + strand, within NIAGMN_06010at 1120.222 kb on + strand, within NIAGMN_06010at 1120.262 kb on + strand, within NIAGMN_06010at 1120.305 kb on + strand, within NIAGMN_06010at 1120.306 kb on - strand, within NIAGMN_06010at 1120.307 kb on + strand, within NIAGMN_06010at 1120.307 kb on + strand, within NIAGMN_06010at 1120.328 kb on + strand, within NIAGMN_06010at 1120.328 kb on + strand, within NIAGMN_06010at 1120.331 kb on + strand, within NIAGMN_06010at 1120.347 kb on - strand, within NIAGMN_06010at 1120.468 kb on - strand, within NIAGMN_06010at 1120.548 kb on - strand, within NIAGMN_06010at 1120.687 kb on + strand, within NIAGMN_06010at 1120.815 kb on - strand, within NIAGMN_06010at 1120.817 kb on - strand, within NIAGMN_06010at 1120.817 kb on - strand, within NIAGMN_06010at 1122.113 kb on + strand, within NIAGMN_06010at 1122.113 kb on + strand, within NIAGMN_06010at 1122.114 kb on - strand, within NIAGMN_06010at 1122.114 kb on - strand, within NIAGMN_06010at 1122.114 kb on - strand, within NIAGMN_06010at 1122.422 kb on + strand, within NIAGMN_06010at 1122.423 kb on - strand, within NIAGMN_06010at 1122.423 kb on - strand, within NIAGMN_06010at 1122.423 kb on - strand, within NIAGMN_06010at 1122.445 kb on + strand, within NIAGMN_06010at 1122.445 kb on + strand, within NIAGMN_06010at 1122.446 kb on - strand, within NIAGMN_06010at 1122.446 kb on - strand, within NIAGMN_06010at 1122.446 kb on - strand, within NIAGMN_06010at 1122.446 kb on - strand, within NIAGMN_06010at 1122.633 kb on - strand, within NIAGMN_06010at 1122.633 kb on - strand, within NIAGMN_06010at 1122.633 kb on - strand, within NIAGMN_06010at 1122.633 kb on - strand, within NIAGMN_06010at 1122.818 kb on + strand, within NIAGMN_06010at 1122.830 kb on + strand, within NIAGMN_06010at 1122.911 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.016 kb on + strand, within NIAGMN_06010at 1123.022 kb on + strand, within NIAGMN_06010at 1123.950 kb on + strandat 1123.986 kb on - strandat 1123.986 kb on - strandat 1124.073 kb on - strandat 1124.305 kb on + strandat 1124.401 kb on + strandat 1124.406 kb on - strandat 1124.652 kb on + strandat 1124.798 kb on - strand, within ybbPat 1124.798 kb on - strand, within ybbPat 1124.798 kb on - strand, within ybbPat 1124.920 kb on - strand, within ybbP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,118,839 - -0.6
1,118,839 - -0.0
1,118,873 + +0.7
1,119,476 - -0.8
1,119,861 + +0.4
1,120,084 - +1.7
1,120,150 + +0.1
1,120,174 + -0.0
1,120,175 - +0.2
1,120,216 + NIAGMN_06010 0.10 -0.5
1,120,216 + NIAGMN_06010 0.10 +1.7
1,120,222 + NIAGMN_06010 0.10 -0.0
1,120,262 + NIAGMN_06010 0.11 -1.8
1,120,305 + NIAGMN_06010 0.12 -0.1
1,120,306 - NIAGMN_06010 0.12 -1.0
1,120,307 + NIAGMN_06010 0.12 -1.7
1,120,307 + NIAGMN_06010 0.12 +0.4
1,120,328 + NIAGMN_06010 0.13 +0.3
1,120,328 + NIAGMN_06010 0.13 +0.6
1,120,331 + NIAGMN_06010 0.13 +0.4
1,120,347 - NIAGMN_06010 0.13 -0.0
1,120,468 - NIAGMN_06010 0.16 -0.1
1,120,548 - NIAGMN_06010 0.18 -1.8
1,120,687 + NIAGMN_06010 0.21 -0.6
1,120,815 - NIAGMN_06010 0.24 +0.3
1,120,817 - NIAGMN_06010 0.25 -0.5
1,120,817 - NIAGMN_06010 0.25 -0.0
1,122,113 + NIAGMN_06010 0.55 -1.4
1,122,113 + NIAGMN_06010 0.55 -0.3
1,122,114 - NIAGMN_06010 0.55 +0.1
1,122,114 - NIAGMN_06010 0.55 +0.3
1,122,114 - NIAGMN_06010 0.55 -0.2
1,122,422 + NIAGMN_06010 0.63 -2.1
1,122,423 - NIAGMN_06010 0.63 +0.1
1,122,423 - NIAGMN_06010 0.63 +0.1
1,122,423 - NIAGMN_06010 0.63 +1.3
1,122,445 + NIAGMN_06010 0.63 +0.5
1,122,445 + NIAGMN_06010 0.63 -0.2
1,122,446 - NIAGMN_06010 0.63 +0.9
1,122,446 - NIAGMN_06010 0.63 -1.3
1,122,446 - NIAGMN_06010 0.63 +0.7
1,122,446 - NIAGMN_06010 0.63 -0.0
1,122,633 - NIAGMN_06010 0.68 +1.3
1,122,633 - NIAGMN_06010 0.68 +0.1
1,122,633 - NIAGMN_06010 0.68 -0.6
1,122,633 - NIAGMN_06010 0.68 -1.4
1,122,818 + NIAGMN_06010 0.72 -0.3
1,122,830 + NIAGMN_06010 0.73 +0.7
1,122,911 + NIAGMN_06010 0.74 +0.8
1,123,016 + NIAGMN_06010 0.77 -0.5
1,123,016 + NIAGMN_06010 0.77 +0.4
1,123,016 + NIAGMN_06010 0.77 +0.5
1,123,016 + NIAGMN_06010 0.77 +0.0
1,123,016 + NIAGMN_06010 0.77 -0.2
1,123,016 + NIAGMN_06010 0.77 +0.3
1,123,016 + NIAGMN_06010 0.77 +0.3
1,123,016 + NIAGMN_06010 0.77 -1.6
1,123,022 + NIAGMN_06010 0.77 +1.1
1,123,950 + -0.0
1,123,986 - -0.5
1,123,986 - -1.1
1,124,073 - +0.5
1,124,305 + +0.7
1,124,401 + +0.8
1,124,406 - +0.2
1,124,652 + -1.2
1,124,798 - ybbP NIAGMN_06015 0.16 +0.9
1,124,798 - ybbP NIAGMN_06015 0.16 -1.7
1,124,798 - ybbP NIAGMN_06015 0.16 -0.0
1,124,920 - ybbP NIAGMN_06015 0.21 +0.3

Or see this region's nucleotide sequence